- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GAL- GLA: alpha-D-galactopyranose-(1-3)-beta-D-galactopyranose(Non-covalent)
- 4 x GLA- GLA: alpha-D-galactopyranose-(1-3)-alpha-D-galactopyranose(Non-covalent)
GLA-GLA.2: 6 residues within 4Å:- Chain A: S.159, T.161, K.178, D.180, N.182, Y.303
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:S.159, A:Y.163, A:K.178, A:N.182, A:N.182
- Water bridges: A:E.152, A:S.159, A:S.159, A:T.161
GLA-GLA.12: 6 residues within 4Å:- Chain B: S.159, T.161, K.178, D.180, N.182, Y.303
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:S.159, B:Y.163, B:K.178, B:N.182, B:N.182
- Water bridges: B:E.152, B:S.159, B:S.159, B:T.161
GLA-GLA.22: 6 residues within 4Å:- Chain C: S.159, T.161, K.178, D.180, N.182, Y.303
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:S.159, C:Y.163, C:Y.163, C:K.178, C:N.182, C:N.182
- Water bridges: C:S.159, C:S.159, C:T.161
GLA-GLA.32: 6 residues within 4Å:- Chain D: S.159, T.161, K.178, D.180, N.182, Y.303
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:S.159, D:Y.163, D:Y.163, D:K.178, D:N.182, D:N.182
- Water bridges: D:S.159, D:S.159, D:T.161
- 8 x TLA: L(+)-TARTARIC ACID(Non-covalent)
TLA.3: 5 residues within 4Å:- Chain A: H.139, L.335, S.336, E.529, R.552
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:S.336, A:E.529, A:R.552
- Water bridges: A:E.337
- Salt bridges: A:H.139, A:R.552, A:R.552
TLA.4: 5 residues within 4Å:- Chain A: T.254, E.255, L.653, I.654, N.655
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:E.255, A:L.653, A:N.655, A:N.655
- Water bridges: A:T.254, A:E.255, A:D.256, A:L.653, A:K.694
TLA.13: 5 residues within 4Å:- Chain B: H.139, L.335, S.336, E.529, R.552
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:S.336, B:E.529, B:R.552
- Water bridges: B:E.337
- Salt bridges: B:H.139, B:R.552, B:R.552
TLA.14: 5 residues within 4Å:- Chain B: T.254, E.255, L.653, I.654, N.655
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:E.255, B:L.653, B:N.655, B:N.655
- Water bridges: B:T.254, B:E.255, B:D.256, B:L.653, B:K.694
TLA.23: 5 residues within 4Å:- Chain C: H.139, L.335, S.336, E.529, R.552
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:S.336, C:R.552
- Water bridges: C:E.337
- Salt bridges: C:H.139, C:R.552, C:R.552
TLA.24: 5 residues within 4Å:- Chain C: T.254, E.255, L.653, I.654, N.655
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:E.255, C:L.653, C:N.655, C:N.655
- Water bridges: C:T.254, C:D.256, C:L.653, C:K.694
TLA.33: 5 residues within 4Å:- Chain D: H.139, L.335, S.336, E.529, R.552
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:S.336, D:R.552
- Water bridges: D:E.337
- Salt bridges: D:H.139, D:R.552, D:R.552
TLA.34: 5 residues within 4Å:- Chain D: T.254, E.255, L.653, I.654, N.655
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:E.255, D:L.653, D:N.655, D:N.655
- Water bridges: D:T.254, D:D.256, D:L.653, D:K.694
- 24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 8 residues within 4Å:- Chain A: E.662, Y.677, R.679, V.683, E.688, T.689, V.723, L.725
Ligand excluded by PLIPEDO.6: 2 residues within 4Å:- Chain A: N.661
- Ligands: EDO.38
Ligand excluded by PLIPEDO.7: 5 residues within 4Å:- Chain A: L.602, R.605, L.618, L.623, E.627
Ligand excluded by PLIPEDO.8: 6 residues within 4Å:- Chain A: I.566, P.570, P.656, D.657
- Chain D: L.681
- Ligands: EDO.36
Ligand excluded by PLIPEDO.9: 5 residues within 4Å:- Chain A: R.44, N.45, Y.47, N.81, F.84
Ligand excluded by PLIPEDO.10: 7 residues within 4Å:- Chain A: T.254
- Chain C: E.250, Q.251, G.252, V.253, A.257, G.258
Ligand excluded by PLIPEDO.15: 8 residues within 4Å:- Chain B: E.662, Y.677, R.679, V.683, E.688, T.689, V.723, L.725
Ligand excluded by PLIPEDO.16: 2 residues within 4Å:- Chain B: N.661
- Ligands: EDO.28
Ligand excluded by PLIPEDO.17: 5 residues within 4Å:- Chain B: L.602, R.605, L.618, L.623, E.627
Ligand excluded by PLIPEDO.18: 6 residues within 4Å:- Chain B: I.566, P.570, P.656, D.657
- Chain C: L.681
- Ligands: EDO.26
Ligand excluded by PLIPEDO.19: 5 residues within 4Å:- Chain B: R.44, N.45, Y.47, N.81, F.84
Ligand excluded by PLIPEDO.20: 7 residues within 4Å:- Chain B: T.254
- Chain D: E.250, Q.251, G.252, V.253, A.257, G.258
Ligand excluded by PLIPEDO.25: 8 residues within 4Å:- Chain C: E.662, Y.677, R.679, V.683, E.688, T.689, V.723, L.725
Ligand excluded by PLIPEDO.26: 2 residues within 4Å:- Chain C: N.661
- Ligands: EDO.18
Ligand excluded by PLIPEDO.27: 5 residues within 4Å:- Chain C: L.602, R.605, L.618, L.623, E.627
Ligand excluded by PLIPEDO.28: 6 residues within 4Å:- Chain B: L.681
- Chain C: I.566, P.570, P.656, D.657
- Ligands: EDO.16
Ligand excluded by PLIPEDO.29: 5 residues within 4Å:- Chain C: R.44, N.45, Y.47, N.81, F.84
Ligand excluded by PLIPEDO.30: 7 residues within 4Å:- Chain A: E.250, Q.251, G.252, V.253, A.257, G.258
- Chain C: T.254
Ligand excluded by PLIPEDO.35: 8 residues within 4Å:- Chain D: E.662, Y.677, R.679, V.683, E.688, T.689, V.723, L.725
Ligand excluded by PLIPEDO.36: 2 residues within 4Å:- Chain D: N.661
- Ligands: EDO.8
Ligand excluded by PLIPEDO.37: 5 residues within 4Å:- Chain D: L.602, R.605, L.618, L.623, E.627
Ligand excluded by PLIPEDO.38: 6 residues within 4Å:- Chain A: L.681
- Chain D: I.566, P.570, P.656, D.657
- Ligands: EDO.6
Ligand excluded by PLIPEDO.39: 5 residues within 4Å:- Chain D: R.44, N.45, Y.47, N.81, F.84
Ligand excluded by PLIPEDO.40: 7 residues within 4Å:- Chain B: E.250, Q.251, G.252, V.253, A.257, G.258
- Chain D: T.254
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hobbs, J.K. et al., Molecular analysis of an enigmaticStreptococcus pneumoniaevirulence factor: The raffinose-family oligosaccharide utilization system. J.Biol.Chem. (2019)
- Release Date
- 2019-10-02
- Peptides
- Alpha-galactosidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GAL- GLA: alpha-D-galactopyranose-(1-3)-beta-D-galactopyranose(Non-covalent)
- 4 x GLA- GLA: alpha-D-galactopyranose-(1-3)-alpha-D-galactopyranose(Non-covalent)
- 8 x TLA: L(+)-TARTARIC ACID(Non-covalent)
- 24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hobbs, J.K. et al., Molecular analysis of an enigmaticStreptococcus pneumoniaevirulence factor: The raffinose-family oligosaccharide utilization system. J.Biol.Chem. (2019)
- Release Date
- 2019-10-02
- Peptides
- Alpha-galactosidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A