SMTL ID : 6plh.1

FAB fragment complexed with C-mannosylated tryptophan peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: R.160, E.190, R.193, H.194 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.160 Water bridges: A:R.193 Salt bridges: A:R.193, A:H.194

1 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.2: 10 residues within 4Å: Chain A: H.98, V.99, P.100, R.101 Chain B: W.47, D.50, N.59, R.99 Chain C: W.16, S.17 9 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: C:S.17, C:S.17, B:D.50, B:R.99, A:R.101, A:R.101 Water bridges: B:N.59, A:H.98, A:R.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

John, A. et al., Yeast- and antibody-based tools for studying tryptophan C-mannosylation. Nat.Chem.Biol. (2021)

Release Date

2020-07-08

Peptides

Fab 5G12 light chain: A
Fab 5G12 heavy chain: B
Interleukin-21 receptor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Fab 5G12 light chain

Fab 5G12 heavy chain

Interleukin-21 receptor