SMTL ID : 6plm.2 (1 other biounit)

Legionella pneumophila SidJ/ Calmodulin 2 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

hetero-1-1-mer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: R.256, D.446, D.449 Ligands: POP.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.446, A:D.446, A:D.449 CA.2: 4 residues within 4Å: Chain A: Y.436, N.438, D.446 Ligands: POP.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.446 CA.5: 4 residues within 4Å: Chain B: D.20, D.22, D.24, T.26 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.20, B:D.22, B:D.24, B:T.26, H2O.3

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.3: 7 residues within 4Å: Chain A: R.256, K.271, N.438, R.440, D.446 Ligands: CA.1, CA.2 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:R.256, A:K.271, A:K.271, A:R.440

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.4: 13 residues within 4Å: Chain A: H.396, H.398, R.409, Y.410, Q.411, V.414, Q.421, F.422, Q.423, L.424, G.425, N.637, R.638 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:H.398, A:R.409, A:Q.411, A:Q.421, A:F.422, A:Q.423, A:G.425 Salt bridges: A:H.396 pi-Stacking: A:H.396, A:H.396

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sulpizio, A. et al., Protein polyglutamylation catalyzed by the bacterial calmodulin-dependent pseudokinase SidJ. Elife (2019)

Release Date

2019-11-20

Peptides

SidJ protein: A
Calmodulin-2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

SidJ protein

Calmodulin-2

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