SMTL ID : 6pmt.1

Structure of Mortalin-NBD with adenosine-5'-monophosphate and thiodiphosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 15 residues within 4Å: Chain A: T.17, N.18, G.200, G.201, G.229, E.267, K.270, C.271, S.274, G.341, G.342, M.343, R.345, D.368 Ligands: PIS.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.201, A:E.267, A:K.270, A:C.271, A:S.274, A:G.342, A:R.345 Water bridges: A:N.18, A:N.18, A:N.18, A:G.202

1 x PIS: TRIHYDROGEN THIODIPHOSPHATE(Non-covalent)

PIS.2: 10 residues within 4Å: Chain A: D.13, G.15, T.16, K.75, P.148, E.176, D.198, T.203, D.205 Ligands: AMP.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.16, A:K.75, A:T.203 Water bridges: A:D.13, A:T.17, A:N.18, A:G.200, A:G.200, A:T.203, A:T.203

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 6 residues within 4Å: Chain A: R.39, T.40, R.345, N.366, D.368, E.369 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.366, A:N.366, A:D.368, A:E.369, A:E.369 Water bridges: A:R.39 Salt bridges: A:R.345

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moseng, M.A. et al., Structure of the mortalin nucleotide binding domain in complex with adenosine monophosphate. to be published

Release Date

2020-07-08

Peptides

Stress-70 protein, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Stress-70 protein, mitochondrial

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