SMTL ID : 6pog.1

Crystal structure of the NELL2 EGF1-6-Robo3 FN1 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.76 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 2 residues within 4Å: Chain B: N.122, T.125 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain B: F.152, T.153, G.154, I.161 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.154

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 7 residues within 4Å: Chain B: D.45, I.46, E.48, N.64, T.65, G.67, S.68 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.45, B:D.45, B:I.46, B:E.48, B:T.65 CA.4: 7 residues within 4Å: Chain B: D.160, I.161, E.163, N.179, L.180, G.182, W.183 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.160, B:I.161, B:E.163, B:E.163, B:L.180 CA.5: 6 residues within 4Å: Chain B: D.207, I.208, E.210, N.226, L.227, G.230 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.207, B:D.207, B:I.208, B:E.210, B:L.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pak, J.S. et al., NELL2-Robo3 complex structure reveals mechanisms of receptor activation for axon guidance. Nat Commun (2020)

Release Date

2020-05-06

Peptides

Roundabout homolog 3: A
Protein kinase C-binding protein NELL2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Roundabout homolog 3

Protein kinase C-binding protein NELL2