SMTL ID : 6ppa.2 (1 other biounit)

Crystal structure of the unliganded bromodomain of human BRD7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: K.23, S.100, K.103 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.100 Water bridges: A:S.100, A:S.100 Salt bridges: A:K.23, A:K.103 PO4.4: 3 residues within 4Å: Chain B: K.23, S.100, K.103 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.100 Water bridges: B:S.100, B:S.100 Salt bridges: B:K.23, B:K.103

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: V.33, A.38, Y.41, Y.83, N.84, Y.90 Ligands: EDO.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.84 Water bridges: A:N.79 EDO.3: 5 residues within 4Å: Chain A: F.28, F.29, A.80, Y.90 Ligands: EDO.2 No protein-ligand interaction detected (PLIP) EDO.5: 7 residues within 4Å: Chain B: V.33, A.38, Y.41, Y.83, N.84, Y.90 Ligands: EDO.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.84 Water bridges: B:N.79 EDO.6: 5 residues within 4Å: Chain B: F.28, F.29, A.80, Y.90 Ligands: EDO.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, R.M. et al., Structural Basis of Inhibitor Selectivity in the BRD7/9 Subfamily of Bromodomains. J.Med.Chem. (2020)

Release Date

2020-03-11

Peptides

Bromodomain-containing protein 7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bromodomain-containing protein 7

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