SMTL ID : 6ppg.1

Crystal structure of IL17FF bound to Fab fragments of MCAF5352A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.53, Y.54 No protein-ligand interaction detected (PLIP) NAG.49: 2 residues within 4Å: Chain F: N.53, R.73 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:R.73

53 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)

CD.2: 2 residues within 4Å: Chain A: M.40, E.45 Ligand excluded by PLIP CD.3: 1 residues within 4Å: Chain A: E.66 Ligand excluded by PLIP CD.4: 1 residues within 4Å: Chain A: E.34 Ligand excluded by PLIP CD.5: 1 residues within 4Å: Chain A: H.104 Ligand excluded by PLIP CD.6: 2 residues within 4Å: Chain A: I.129 Chain D: I.100 Ligand excluded by PLIP CD.7: 2 residues within 4Å: Chain B: E.124 Ligands: CD.10 Ligand excluded by PLIP CD.8: 1 residues within 4Å: Chain B: E.81 Ligand excluded by PLIP CD.9: 1 residues within 4Å: Chain B: D.168 Ligand excluded by PLIP CD.10: 2 residues within 4Å: Chain B: E.124 Ligands: CD.7 Ligand excluded by PLIP CD.11: 1 residues within 4Å: Chain B: N.211 Ligand excluded by PLIP CD.12: 4 residues within 4Å: Chain B: N.139, D.168, D.171 Chain C: H.174 Ligand excluded by PLIP CD.13: 1 residues within 4Å: Chain B: S.160 Ligand excluded by PLIP CD.14: 2 residues within 4Å: Chain B: Q.148, E.196 Ligand excluded by PLIP CD.15: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CD.16: 1 residues within 4Å: Chain B: E.17 Ligand excluded by PLIP CD.17: 1 residues within 4Å: Chain B: E.1 Ligand excluded by PLIP CD.18: 2 residues within 4Å: Chain B: E.79, E.81 Ligand excluded by PLIP CD.19: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CD.20: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CD.21: 3 residues within 4Å: Chain B: D.152, K.189, H.190 Ligand excluded by PLIP CD.22: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CD.23: 3 residues within 4Å: Chain C: D.30, N.74, N.77 Ligand excluded by PLIP CD.24: 1 residues within 4Å: Chain C: D.62 Ligand excluded by PLIP CD.25: 1 residues within 4Å: Chain C: E.222 Ligand excluded by PLIP CD.26: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CD.27: 1 residues within 4Å: Chain C: D.31 Ligand excluded by PLIP CD.28: 1 residues within 4Å: Chain C: E.89 Ligand excluded by PLIP CD.29: 1 residues within 4Å: Chain C: D.218 Ligand excluded by PLIP CD.30: 3 residues within 4Å: Chain D: D.30, N.74, N.77 Ligand excluded by PLIP CD.31: 1 residues within 4Å: Chain D: D.62 Ligand excluded by PLIP CD.32: 1 residues within 4Å: Chain D: D.218 Ligand excluded by PLIP CD.33: 1 residues within 4Å: Chain D: E.222 Ligand excluded by PLIP CD.34: 1 residues within 4Å: Chain D: D.31 Ligand excluded by PLIP CD.35: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CD.36: 3 residues within 4Å: Chain E: R.61, E.79, E.81 Ligand excluded by PLIP CD.37: 1 residues within 4Å: Chain E: E.81 Ligand excluded by PLIP CD.38: 2 residues within 4Å: Chain E: D.123, C.216 Ligand excluded by PLIP CD.39: 3 residues within 4Å: Chain D: H.174 Chain E: N.139, D.171 Ligand excluded by PLIP CD.40: 2 residues within 4Å: Chain E: Q.148, E.196 Ligand excluded by PLIP CD.41: 1 residues within 4Å: Chain E: E.1 Ligand excluded by PLIP CD.42: 1 residues within 4Å: Chain E: V.85 Ligand excluded by PLIP CD.43: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CD.44: 2 residues within 4Å: Chain E: D.123, E.124 Ligand excluded by PLIP CD.45: 2 residues within 4Å: Chain E: D.152, H.190 Ligand excluded by PLIP CD.46: 1 residues within 4Å: Chain E: S.160 Ligand excluded by PLIP CD.47: 1 residues within 4Å: Chain E: D.186 Ligand excluded by PLIP CD.48: 1 residues within 4Å: Chain E: E.17 Ligand excluded by PLIP CD.50: 1 residues within 4Å: Chain F: Q.95 Ligand excluded by PLIP CD.51: 2 residues within 4Å: Chain F: M.40, E.45 Ligand excluded by PLIP CD.52: 2 residues within 4Å: Chain F: P.64, E.66 Ligand excluded by PLIP CD.53: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CD.54: 1 residues within 4Å: Chain F: H.130 Ligand excluded by PLIP CD.55: 1 residues within 4Å: Chain F: E.96 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tilegenova, C. et al., Dissecting the molecular basis of high viscosity of monospecific and bispecific IgG antibodies. Mabs

Release Date

2019-12-11

Peptides

Interleukin-17F: AF
Fab MCAF5352A light chain: BE
Fab MCAF5352A heavy chain: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

F
G

B
A

E
L

C
B

D
H

Interleukin-17F

Fab MCAF5352A light chain

Fab MCAF5352A heavy chain

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