SMTL ID : 6ppo.1 (3 other biounits)

Rhinovirus C15 complexed with domain I of receptor CDHR3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain E: E.25, E.87, D.117, V.118, N.119 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:E.87, E:D.117 CA.2: 2 residues within 4Å: Chain E: E.25, E.87 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.25, E:E.87, E:E.87 CA.3: 2 residues within 4Å: Chain E: V.118, N.119 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, Y. et al., Cryo-EM structure of rhinovirus C15a bound to its cadherin-related protein 3 receptor. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-03-11

Peptides

Capsid protein VP1: A
Capsid protein VP3: B
Capsid protein VP2: C
Capsid protein VP4: D
Cadherin-related family member 3: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
U

Capsid protein VP1

Capsid protein VP3

Capsid protein VP2

Capsid protein VP4

Cadherin-related family member 3

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