SMTL ID : 6pqx.1

Cryo-EM structure of HzTransib/nicked TIR substrate DNA hairpin forming complex (HFC)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.109, G.110, E.419 Chain D: G.16, A.17 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.109, A:D.109, A:G.110, A:E.419 CA.2: 3 residues within 4Å: Chain A: D.208 Chain B: T.16 Chain D: A.17 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.208 CA.3: 5 residues within 4Å: Chain E: D.109, G.110, E.419 Chain H: G.16, A.17 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.109, E:D.109, E:G.110, E:E.419 CA.4: 3 residues within 4Å: Chain E: D.208 Chain F: T.16 Chain H: A.17 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:D.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, C. et al., Structures of a RAG-like transposase during cut-and-paste transposition. Nature (2019)

Release Date

2019-10-09

Peptides

DNA-mediated transposase: AE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

DNA-mediated transposase

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