SMTL ID : 6pra.1

S. aureus dihydrofolate reductase with NADP(H) and empty folate pocket

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 25 residues within 4Å: Chain A: V.7, A.8, I.15, G.16, N.19, Q.20, L.21, W.23, G.44, R.45, K.46, T.47, L.63, T.64, S.65, H.78, I.80, F.93, G.94, G.95, Q.96, T.97, L.98, E.101, T.122 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:L.21, A:T.47 Hydrogen bonds: A:A.8, A:I.15, A:N.19, A:N.19, A:N.19, A:G.44, A:R.45, A:R.45, A:K.46, A:T.47, A:T.47, A:T.64, A:S.65, A:G.95, A:Q.96, A:T.97, A:T.97, A:T.97, A:L.98, A:E.101 Water bridges: A:N.19, A:I.80, A:I.80, A:T.122 Salt bridges: A:R.45, A:K.46

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: R.13, P.126, Y.127, F.129 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.13, A:Y.127 GOL.3: 8 residues within 4Å: Chain A: I.103, D.104, P.126, Y.127, T.128, D.131, W.132, R.157 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.103, A:D.104, A:T.128, A:T.128, A:R.157 Water bridges: A:D.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muddala, N.P. et al., Inhibitor design to target a unique feature in the folate pocket of Staphylococcus aureus dihydrofolate reductase. Eur.J.Med.Chem. (2020)

Release Date

2020-06-17

Peptides

Dihydrofolate reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydrofolate reductase

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