SMTL ID : 6ps0.1

XFEL beta2 AR structure by ligand exchange from Alprenolol to Carazolol.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

monomer

Ligands

1 x CAU: (2S)-1-(9H-Carbazol-4-yloxy)-3-(isopropylamino)propan-2-ol(Non-covalent)

CAU.1: 16 residues within 4Å: Chain A: W.133, T.134, D.137, V.138, V.141, T.142, F.217, T.219, S.227, S.231, W.438, F.441, F.442, N.445, N.464, Y.468 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.133, A:T.134, A:V.138, A:V.141, A:F.217, A:T.219, A:F.441 Hydrogen bonds: A:D.137, A:S.227, A:N.464, A:N.464, A:Y.468 pi-Stacking: A:F.442

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: T.90, V.91, T.92, R.155, Y.165, Q.166, S.167 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.90, A:V.91, A:T.92, A:S.167 Salt bridges: A:R.155 SO4.3: 3 residues within 4Å: Chain A: K.422, K.425, R.480 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.422, A:K.425, A:R.480 SO4.4: 5 residues within 4Å: Chain A: F.367, T.368, N.369, S.370, N.385 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.367, A:N.369, A:S.370, A:N.385

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.5: 8 residues within 4Å: Chain A: Y.94, S.98, C.101, R.175, I.178, L.179, W.182 Ligands: OLC.6 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.178, A:W.182, A:W.182

3 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.6: 7 residues within 4Å: Chain A: I.79, Q.89, Y.94, T.97, C.101, R.175 Ligands: CLR.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.79 Hydrogen bonds: A:Y.94, A:R.175 OLC.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) OLC.8: 7 residues within 4Å: Chain A: F.247, F.416, K.425, G.428, I.429, T.433, L.436 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.436

1 x OLA: OLEIC ACID(Non-covalent)

OLA.9: 4 residues within 4Å: Chain A: Y.156, F.241, V.242, R.245 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.156, A:F.241, A:R.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ishchenko, A. et al., Toward G protein-coupled receptor structure-based drug design using X-ray lasers. Iucrj (2019)

Release Date

2019-11-13

Peptides

Fusion protein of Beta-2 adrenergic receptor and T4 Lysozyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Fusion protein of Beta-2 adrenergic receptor and T4 Lysozyme

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