SMTL ID : 6ps9.1

Crystal structure of BRD4 bromodomain 1 with N-methylpyrrolidin-2-one (NMP) derivative 17 (5-{2-[(3R)-1-methyl-5-oxopyrrolidin-3-yl]ethyl}-2,3,4,5-tetrahydro-1H-pyrido[4,3-b]indol-1-one)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.21 Å

Oligo State

monomer

Ligands

1 x Y17: 5-{2-[(3R)-1-methyl-5-oxopyrrolidin-3-yl]ethyl}-2,3,4,5-tetrahydro-1H-pyrido[4,3-b]indol-1-one(Non-covalent)

Y17.1: 14 residues within 4Å: Chain A: W.39, P.40, F.41, V.45, L.50, L.52, Y.55, C.94, Y.97, N.98, D.102, D.103, I.104, M.107 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.39, A:P.40, A:L.50, A:L.52, A:I.104, A:I.104 Hydrogen bonds: A:N.98, A:D.102, A:D.103, A:I.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hilton-Proctor, J.P. et al., Synthesis and elaboration of N-methylpyrrolidone as an acetamide fragment substitute in bromodomain inhibition. Bioorg.Med.Chem. (2019)

Release Date

2019-11-27

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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