SMTL ID : 6psp.1 (1 other biounit)

Adenylate kinase from Methanococcus igneus - AP5A bound form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-trimer

Ligands

3 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)

AP5.1: 31 residues within 4Å: Chain A: P.12, G.13, V.14, G.15, G.16, T.17, T.18, N.38, F.39, G.40, M.43, R.56, M.59, R.60, Q.67, Q.71, T.91, H.92, V.95, L.102, G.104, L.105, R.131, R.138, R.140, N.175, R.176, D.177, G.178, L.179, L.180 28 PLIP interactions: 28 interactions with chain A Hydrogen bonds: A:G.13, A:G.15, A:G.15, A:G.16, A:T.17, A:T.17, A:T.18, A:T.18, A:N.38, A:M.59, A:R.60, A:R.60, A:Q.71, A:T.91, A:T.91, A:R.131, A:N.175, A:N.175, A:G.178 Salt bridges: A:R.56, A:H.92, A:H.92, A:R.138, A:R.138, A:R.138, A:R.140 pi-Cation interactions: A:R.131, A:R.131 AP5.2: 31 residues within 4Å: Chain B: P.12, G.13, V.14, G.15, G.16, T.17, T.18, N.38, F.39, G.40, M.43, R.56, M.59, R.60, Q.67, Q.71, T.91, H.92, V.95, L.102, G.104, L.105, R.131, R.138, R.140, N.175, R.176, D.177, G.178, L.179, L.180 28 PLIP interactions: 28 interactions with chain B Hydrogen bonds: B:G.13, B:G.15, B:G.16, B:T.17, B:T.17, B:T.18, B:T.18, B:N.38, B:R.60, B:Q.71, B:T.91, B:G.104, B:R.131, B:N.175, B:R.176, B:G.178, B:L.180 Water bridges: B:R.56, B:M.59 Salt bridges: B:R.56, B:H.92, B:H.92, B:R.138, B:R.138, B:R.138, B:R.140 pi-Cation interactions: B:R.131, B:R.131 AP5.3: 32 residues within 4Å: Chain C: P.12, G.13, V.14, G.15, G.16, T.17, T.18, N.38, F.39, G.40, M.43, R.56, D.57, M.59, R.60, Q.67, Q.71, T.91, H.92, V.95, L.102, G.104, L.105, R.131, R.138, R.140, N.175, R.176, D.177, G.178, L.179, L.180 27 PLIP interactions: 27 interactions with chain C Hydrogen bonds: C:G.13, C:G.15, C:G.16, C:T.17, C:T.17, C:T.18, C:T.18, C:N.38, C:R.56, C:R.60, C:Q.67, C:Q.71, C:T.91, C:H.92, C:G.104, C:N.175, C:N.175, C:G.178 Salt bridges: C:H.92, C:H.92, C:R.138, C:R.138, C:R.138, C:R.140, C:R.140 pi-Cation interactions: C:R.131, C:R.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bae, E., Adenylate kinase from Methanococcus igneus - AMP bound form. To Be Published

Release Date

2020-07-01

Peptides

Adenylate kinase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Adenylate kinase

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