SMTL ID : 6pt3.1

Crystal structure of the active delta opioid receptor in complex with the small molecule agonist DPI-287

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-dimer

Ligands

2 x OWY: 4-[(R)-[(2S,5R)-4-benzyl-2,5-dimethylpiperazin-1-yl](3-hydroxyphenyl)methyl]-N,N-diethylbenzamide(Non-covalent)

OWY.1: 18 residues within 4Å: Chain A: A.214, D.244, Y.245, S.247, M.248, K.330, V.333, W.390, I.393, H.394, F.396, V.397, W.400, L.416, I.420, G.423, Y.424, S.427 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:A.214, A:Y.245, A:M.248, A:V.333, A:W.390, A:W.390, A:I.393, A:I.393, A:F.396, A:V.397, A:W.400, A:L.416, A:I.420, A:Y.424 Salt bridges: A:D.244, A:D.244 OWY.2: 17 residues within 4Å: Chain B: A.214, D.244, Y.245, S.247, M.248, K.330, V.333, W.390, I.393, H.394, V.397, W.400, L.416, I.420, G.423, Y.424, S.427 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:A.214, B:Y.245, B:M.248, B:V.333, B:W.390, B:W.390, B:I.393, B:I.393, B:V.397, B:W.400, B:L.416, B:I.420, B:Y.424 Salt bridges: B:D.244, B:D.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Claff, T. et al., Elucidating the active delta-opioid receptor crystal structure with peptide and small-molecule agonists. Sci Adv (2019)

Release Date

2019-12-11

Peptides

Delta opioid receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Delta opioid receptor

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