SMTL ID : 6ptq.1

Dark, Room Temperature, PCM Myxobacterial Phytochrome, P2, Wild Type

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x EL5: 3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(E)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{(Z)-[(3E,4S)-3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-3-yl]propanoic acid(Non-covalent)

EL5.1: 26 residues within 4Å: Chain A: C.5, E.8, I.10, M.151, Y.153, F.180, T.183, D.184, I.185, P.186, A.189, Y.193, R.199, I.201, R.231, V.233, S.234, V.236, H.237, Y.240, S.249, S.251, L.263, H.267, L.446, P.448 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:I.10, A:Y.153, A:F.180, A:F.180, A:D.184, A:I.185, A:P.186, A:A.189, A:Y.193, A:I.201, A:V.233, A:V.236, A:Y.240, A:L.263, A:L.446 Hydrogen bonds: A:D.184, A:D.184, A:Y.193, A:Y.193, A:S.234, A:H.237, A:S.249 Water bridges: A:D.184, A:F.250, A:F.250, A:H.267 Salt bridges: A:R.231, A:H.237 pi-Stacking: A:H.237 EL5.3: 28 residues within 4Å: Chain B: C.5, E.8, I.10, M.151, Y.153, V.163, F.180, T.183, D.184, I.185, P.186, A.189, Y.193, I.201, R.231, V.233, S.234, V.236, H.237, Y.240, S.249, S.251, L.263, A.265, H.267, L.446, H.447, P.448 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:I.10, B:I.10, B:Y.153, B:V.163, B:F.180, B:F.180, B:D.184, B:I.185, B:P.186, B:A.189, B:Y.193, B:I.201, B:L.263, B:L.446 Hydrogen bonds: B:D.184, B:D.184, B:Y.193, B:S.234, B:S.249 Water bridges: B:F.250, B:F.250, B:R.449, B:R.449 Salt bridges: B:R.231, B:H.237 pi-Cation interactions: B:H.237

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.2: 6 residues within 4Å: Chain A: D.305, A.309, R.468 Chain B: D.305, G.472, G.476 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.305

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sanchez, J.C. et al., High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures. Struct Dyn. (2019)

Release Date

2019-10-09

Peptides

Photoreceptor-histidine kinase BphP: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Photoreceptor-histidine kinase BphP

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