SMTL ID : 6pv4.4 (3 other biounits)

Structure of CpGH84A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: D.359 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.359, H2O.3, H2O.7, H2O.9, H2O.14 CA.2: 5 residues within 4Å: Chain A: N.99, D.106, N.110, H.115, E.117 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.115, A:E.117, A:E.117, H2O.1, H2O.3 CA.3: 2 residues within 4Å: Chain A: E.538, E.541 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.538, A:E.541, A:E.541, H2O.13 CA.4: 3 residues within 4Å: Chain A: F.120, K.123, E.141 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:F.120, A:K.123, A:E.141, H2O.4, H2O.13 CA.5: 3 residues within 4Å: Chain A: Q.39, E.176, N.457 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.176, A:E.176, H2O.6, H2O.6

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 3 residues within 4Å: Chain A: I.370, W.371, R.505 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.371, A:R.505 Water bridges: A:W.371 EDO.7: 6 residues within 4Å: Chain A: S.223, K.224, W.225, R.226, N.260, N.261 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.224, A:R.226, A:N.261 EDO.8: 7 residues within 4Å: Chain A: E.184, Y.186, G.188, P.190, A.214, P.215, K.216 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.184, A:Y.186, A:K.216 Water bridges: A:G.188, A:G.188 EDO.9: 2 residues within 4Å: Chain A: N.485, Y.552 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.485

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pluvinage, B. et al., Structural and functional analysis of four family 84 glycoside hydrolases from the opportunistic pathogen Clostridium perfringens. Glycobiology (2019)

Release Date

2019-09-11

Peptides

Glycoside Hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Glycoside Hydrolase

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