- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x PIO: [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate(Non-covalent)
- 4 x PCW: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Covalent)(Non-covalent)
PCW.2: 25 residues within 4Å:- Chain A: M.435, V.437, Y.440, W.449, G.450, S.453, A.457, W.461, I.464, M.482, D.490, S.491, R.492, P.494, W.495, Y.500, L.503, L.504, F.774
- Chain D: Y.85, Y.87, Y.95, W.125, V.126, Y.136
15 PLIP interactions:12 interactions with chain A, 3 interactions with chain D- Hydrophobic interactions: A:A.457, A:A.457, A:I.464, A:I.464, A:P.494, A:W.495, A:Y.500, A:L.503, A:L.504, A:F.774
- Hydrogen bonds: A:Y.440, D:Y.136
- Salt bridges: A:D.490, D:K.128
- pi-Cation interactions: D:Y.85
PCW.5: 21 residues within 4Å:- Chain A: Y.85, Y.87, Y.95, W.125, V.126, Y.136
- Chain B: M.435, V.437, Y.440, S.453, L.454, A.457, W.461, D.490, S.491, R.492, P.494, W.495, Y.500, L.503, L.504
14 PLIP interactions:2 interactions with chain A, 12 interactions with chain B- Salt bridges: A:K.128
- pi-Cation interactions: A:Y.85
- Hydrophobic interactions: B:V.437, B:L.454, B:L.454, B:P.494, B:P.494, B:Y.500, B:Y.500, B:L.503, B:L.504, B:L.504
- Hydrogen bonds: B:Y.440, B:S.491
PCW.8: 25 residues within 4Å:- Chain B: Y.85, Y.87, Y.95, W.125, V.126, Y.136
- Chain C: M.435, V.437, Y.440, W.449, G.450, S.453, A.457, W.461, I.464, M.482, D.490, S.491, R.492, P.494, W.495, Y.500, L.503, L.504, F.774
15 PLIP interactions:3 interactions with chain B, 12 interactions with chain C- Hydrogen bonds: B:Y.136, C:Y.440
- Salt bridges: B:K.128, C:D.490
- pi-Cation interactions: B:Y.85
- Hydrophobic interactions: C:A.457, C:A.457, C:I.464, C:I.464, C:P.494, C:W.495, C:Y.500, C:L.503, C:L.504, C:F.774
PCW.11: 21 residues within 4Å:- Chain C: Y.85, Y.87, Y.95, W.125, V.126, Y.136
- Chain D: M.435, V.437, Y.440, S.453, L.454, A.457, W.461, D.490, S.491, R.492, P.494, W.495, Y.500, L.503, L.504
14 PLIP interactions:12 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:V.437, D:L.454, D:L.454, D:P.494, D:P.494, D:Y.500, D:Y.500, D:L.503, D:L.504, D:L.504
- Hydrogen bonds: D:Y.440, D:S.491
- Salt bridges: C:K.128
- pi-Cation interactions: C:Y.85
- 4 x PIK: (2S)-3-{[(R)-hydroxy{[(1R,2R,3S,4R,5R,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dihexadecanoate(Non-covalent)(Covalent)
PIK.3: 12 residues within 4Å:- Chain A: M.564, S.565, S.566, G.567, W.568, A.608, M.612, K.635, L.638, I.639, R.761
- Chain D: F.723
9 PLIP interactions:8 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: A:A.608, A:L.638, A:I.639, D:F.723
- Hydrogen bonds: A:S.566, A:S.566, A:G.567, A:R.761
- Salt bridges: A:K.635
PIK.6: 18 residues within 4Å:- Chain A: I.652, L.663, F.723, F.727, V.730, T.731
- Chain B: M.564, S.565, G.567, W.568, V.570, M.571, D.604, M.612, F.615, M.634, K.635, I.639
10 PLIP interactions:3 interactions with chain B, 7 interactions with chain A- Hydrophobic interactions: B:W.568, B:D.604, B:F.615, A:I.652, A:L.663, A:F.723, A:F.727, A:F.727, A:V.730, A:T.731
PIK.9: 11 residues within 4Å:- Chain B: F.723
- Chain C: M.564, S.565, S.566, G.567, W.568, A.608, M.612, K.635, L.638, I.639
8 PLIP interactions:7 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:A.608, C:L.638, C:I.639, B:F.723
- Hydrogen bonds: C:S.566, C:S.566, C:G.567
- Salt bridges: C:K.635
PIK.12: 18 residues within 4Å:- Chain C: I.652, L.663, F.723, F.727, V.730, T.731
- Chain D: M.564, S.565, G.567, W.568, V.570, M.571, D.604, M.612, F.615, M.634, K.635, I.639
10 PLIP interactions:7 interactions with chain C, 3 interactions with chain D- Hydrophobic interactions: C:I.652, C:L.663, C:F.723, C:F.727, C:F.727, C:V.730, C:T.731, D:W.568, D:D.604, D:F.615
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McGoldrick, L.L. et al., Structure of the thermo-sensitive TRP channel TRP1 from the alga Chlamydomonas reinhardtii. Nat Commun (2019)
- Release Date
- 2019-09-25
- Peptides
- TRP-like ion channel: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x PIO: [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate(Non-covalent)
- 4 x PCW: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Covalent)(Non-covalent)
- 4 x PIK: (2S)-3-{[(R)-hydroxy{[(1R,2R,3S,4R,5R,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dihexadecanoate(Non-covalent)(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McGoldrick, L.L. et al., Structure of the thermo-sensitive TRP channel TRP1 from the alga Chlamydomonas reinhardtii. Nat Commun (2019)
- Release Date
- 2019-09-25
- Peptides
- TRP-like ion channel: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.