SMTL ID : 6px0.1

Crystal structure of the TPR domain of human aryl hydrocarbon receptor-interacting protein-like 1 (AIPL1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: Q.77, L.80, Y.107, V.108, R.111 Ligands: PEG.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.77 Water bridges: A:Q.77 PEG.2: 7 residues within 4Å: Chain A: L.80, K.81, E.83, Y.85, R.111, E.115 Ligands: PEG.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.85, A:R.111, A:R.111 Water bridges: A:E.83

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 3 residues within 4Å: Chain A: H.21, G.22, N.25 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.22 Water bridges: A:K.29

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 5 residues within 4Å: Chain A: N.25, F.28, Y.40, N.74, Q.77 No protein-ligand interaction detected (PLIP) BME.5: 4 residues within 4Å: Chain A: I.44, I.72, Y.75, H.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.91

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 4 residues within 4Å: Chain A: R.48, W.61, E.65, H.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.48, A:R.48, A:E.65 EDO.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.8: 3 residues within 4Å: Chain A: E.87, E.90, H.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yadav, R.P. et al., Interaction of the tetratricopeptide repeat domain of aryl hydrocarbon receptor-interacting protein-like 1 with the regulatory P gamma subunit of phosphodiesterase 6. J.Biol.Chem. (2019)

Release Date

2019-09-18

Peptides

Aryl-hydrocarbon-interacting protein-like 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aryl-hydrocarbon-interacting protein-like 1