- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose(Non-covalent)
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.2: 4 residues within 4Å:- Chain A: G.69, A.70, W.71, Y.79
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:A.70
- Hydrogen bonds: A:W.71
- Water bridges: A:Y.79
ACT.13: 4 residues within 4Å:- Chain B: G.69, A.70, W.71, Y.79
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:A.70
- Hydrogen bonds: B:W.71
- 8 x CA: CALCIUM ION(Non-covalent)
CA.3: 4 residues within 4Å:- Chain A: V.41, N.43, E.47, E.128
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:V.41, A:E.47, A:E.128, A:E.128, H2O.3
CA.4: 4 residues within 4Å:- Chain A: D.66, D.93, E.103, D.104
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.66, A:D.66, A:D.93, A:D.104, H2O.3
CA.5: 6 residues within 4Å:- Chain A: Q.90, D.92, E.103, N.115, D.116
- Ligands: A2G.1
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.92, A:E.103, A:D.116, A:D.116
CA.6: 4 residues within 4Å:- Chain A: E.29, Q.33, H.38, L.39
No protein-ligand interaction detected (PLIP)CA.14: 4 residues within 4Å:- Chain B: V.41, N.43, E.47, E.128
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:V.41, B:E.47, B:E.128, B:E.128, H2O.9
CA.15: 4 residues within 4Å:- Chain B: D.66, D.93, E.103, D.104
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.66, B:D.66, B:D.93, B:D.104, H2O.8
CA.16: 6 residues within 4Å:- Chain B: Q.90, D.92, E.103, N.115, D.116
- Ligands: A2G.12
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.92, B:E.103, B:D.116, B:D.116
CA.17: 4 residues within 4Å:- Chain B: E.29, Q.33, H.38, L.39
No protein-ligand interaction detected (PLIP)- 10 x CL: CHLORIDE ION(Non-functional Binders)
CL.7: 5 residues within 4Å:- Chain A: R.121, P.122
- Chain B: R.121, P.122
- Ligands: CL.18
Ligand excluded by PLIPCL.8: 3 residues within 4Å:- Chain A: W.17, H.20, S.21
Ligand excluded by PLIPCL.9: 3 residues within 4Å:- Chain A: Q.84, N.85, W.86
Ligand excluded by PLIPCL.10: 4 residues within 4Å:- Chain A: D.104, D.117, V.118, C.119
Ligand excluded by PLIPCL.11: 2 residues within 4Å:- Chain A: W.94, Q.95
Ligand excluded by PLIPCL.18: 5 residues within 4Å:- Chain A: R.121, P.122
- Chain B: R.121, P.122
- Ligands: CL.7
Ligand excluded by PLIPCL.19: 3 residues within 4Å:- Chain B: W.17, H.20, S.21
Ligand excluded by PLIPCL.20: 3 residues within 4Å:- Chain B: Q.84, N.85, W.86
Ligand excluded by PLIPCL.21: 4 residues within 4Å:- Chain B: D.104, D.117, V.118, C.119
Ligand excluded by PLIPCL.22: 2 residues within 4Å:- Chain B: W.94, Q.95
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gabba, A. et al., Crystal Structure of the Carbohydrate Recognition Domain of the Human Macrophage Galactose C-Type Lectin Bound to GalNAc and the Tumor-Associated Tn Antigen. Biochemistry (2021)
- Release Date
- 2020-07-29
- Peptides
- C-type lectin domain family 10 member A: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose(Non-covalent)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 8 x CA: CALCIUM ION(Non-covalent)
- 10 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gabba, A. et al., Crystal Structure of the Carbohydrate Recognition Domain of the Human Macrophage Galactose C-Type Lectin Bound to GalNAc and the Tumor-Associated Tn Antigen. Biochemistry (2021)
- Release Date
- 2020-07-29
- Peptides
- C-type lectin domain family 10 member A: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A