SMTL ID : 6pyb.1

Sex Hormone-binding globulin mutant E176K in complex with DVT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x P5G: 4,4'-[(3R,4R)-oxolane-3,4-diylbis(methylene)]bis(2-methoxyphenol)(Non-covalent)

P5G.1: 21 residues within 4Å: Chain A: L.34, I.37, T.40, F.56, G.58, D.59, T.60, D.65, W.66, F.67, L.80, N.82, V.105, M.107, V.112, V.127, S.128, R.135, M.139, I.141, L.171 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:T.40, A:F.67, A:L.171 Hydrogen bonds: A:N.82, A:S.128, A:R.135, A:R.135 P5G.3: 21 residues within 4Å: Chain B: L.34, I.37, T.40, F.56, G.58, D.59, T.60, D.65, W.66, F.67, L.80, N.82, V.105, M.107, V.112, V.127, S.128, R.135, M.139, I.141, L.171 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:T.40, B:F.67, B:L.171 Hydrogen bonds: B:N.82, B:S.128, B:R.135, B:R.135 Water bridges: B:D.65, B:D.65

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.50, E.52, A.160, L.161, D.162 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.50, A:E.52, A:A.160, H2O.2, H2O.3 CA.4: 5 residues within 4Å: Chain B: D.50, E.52, A.160, L.161, D.162 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.50, B:E.52, B:A.160, H2O.6, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Round, P. et al., Molecular interactions between sex hormone-binding globulin and nonsteroidal ligands that enhance androgen activity. J.Biol.Chem. (2020)

Release Date

2019-12-25

Peptides

Sex hormone-binding globulin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Sex hormone-binding globulin

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