- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- hetero-4-4-4-mer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.2: 3 residues within 4Å:- Chain A: F.8, N.10, N.159
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:F.8
NAG.3: 2 residues within 4Å:- Chain A: N.70, W.362
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.70, A:W.362
NAG.9: 3 residues within 4Å:- Chain D: F.8, N.10, N.159
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:F.8
NAG.10: 2 residues within 4Å:- Chain D: N.70, W.362
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.70, D:W.362
NAG.16: 3 residues within 4Å:- Chain G: F.8, N.10, N.159
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:F.8
NAG.17: 2 residues within 4Å:- Chain G: N.70, W.362
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:N.70, G:W.362
NAG.23: 3 residues within 4Å:- Chain J: F.8, N.10, N.159
1 PLIP interactions:1 interactions with chain J- Hydrogen bonds: J:F.8
NAG.24: 2 residues within 4Å:- Chain J: N.70, W.362
2 PLIP interactions:2 interactions with chain J- Hydrogen bonds: J:N.70, J:W.362
- 4 x CA: CALCIUM ION(Non-covalent)
CA.4: 6 residues within 4Å:- Chain A: D.218, N.219, G.222, D.249, N.271, G.272
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.218, A:G.222, A:D.249, A:N.271, H2O.1
CA.11: 6 residues within 4Å:- Chain D: D.218, N.219, G.222, D.249, N.271, G.272
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.218, D:G.222, D:D.249, D:N.271, H2O.3
CA.18: 6 residues within 4Å:- Chain G: D.218, N.219, G.222, D.249, N.271, G.272
5 PLIP interactions:4 interactions with chain G, 1 Ligand-Water interactions- Metal complexes: G:D.218, G:G.222, G:D.249, G:N.271, H2O.5
CA.25: 6 residues within 4Å:- Chain J: D.218, N.219, G.222, D.249, N.271, G.272
5 PLIP interactions:4 interactions with chain J, 1 Ligand-Water interactions- Metal complexes: J:D.218, J:G.222, J:D.249, J:N.271, H2O.7
- 12 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.5: 5 residues within 4Å:- Chain A: R.76, W.103, S.104, E.152, E.202
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.76, A:E.202
PO4.6: 5 residues within 4Å:- Chain A: R.31
- Chain J: H.68, N.70, G.71, T.72
2 PLIP interactions:1 interactions with chain J, 1 interactions with chain A- Hydrogen bonds: J:Q.60
- Salt bridges: A:R.31
PO4.7: 5 residues within 4Å:- Chain A: C.16, E.339, C.342, R.344
- Chain J: P.136
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.344
- Salt bridges: A:R.344
PO4.12: 5 residues within 4Å:- Chain D: R.76, W.103, S.104, E.152, E.202
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:R.76, D:E.202
PO4.13: 5 residues within 4Å:- Chain D: R.31
- Chain G: H.68, N.70, G.71, T.72
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain G- Salt bridges: D:R.31
- Hydrogen bonds: G:Q.60
PO4.14: 5 residues within 4Å:- Chain D: C.16, E.339, C.342, R.344
- Chain G: P.136
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:R.344
- Salt bridges: D:R.344
PO4.19: 5 residues within 4Å:- Chain G: R.76, W.103, S.104, E.152, E.202
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:R.76, G:E.202
PO4.20: 5 residues within 4Å:- Chain A: H.68, N.70, G.71, T.72
- Chain G: R.31
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain G- Hydrogen bonds: A:Q.60
- Salt bridges: G:R.31
PO4.21: 5 residues within 4Å:- Chain A: P.136
- Chain G: C.16, E.339, C.342, R.344
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:R.344
- Salt bridges: G:R.344
PO4.26: 5 residues within 4Å:- Chain J: R.76, W.103, S.104, E.152, E.202
2 PLIP interactions:2 interactions with chain J- Hydrogen bonds: J:R.76, J:E.202
PO4.27: 5 residues within 4Å:- Chain D: H.68, N.70, G.71, T.72
- Chain J: R.31
2 PLIP interactions:1 interactions with chain J, 1 interactions with chain D- Salt bridges: J:R.31
- Hydrogen bonds: D:Q.60
PO4.28: 5 residues within 4Å:- Chain D: P.136
- Chain J: C.16, E.339, C.342, R.344
2 PLIP interactions:2 interactions with chain J- Hydrogen bonds: J:R.344
- Salt bridges: J:R.344
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhu, X. et al., Structural Basis of Protection against H7N9 Influenza Virus by Human Anti-N9 Neuraminidase Antibodies. Cell Host Microbe (2019)
- Release Date
- 2019-12-04
- Peptides
- Neuraminidase: ADGJ
NA-63 Fab light chain: BEHK
NA-63 Fab heavy chain: CFIL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BD
BG
BJ
BB
EE
EH
EK
EC
FF
FI
FL
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- hetero-4-4-4-mer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
- 12 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhu, X. et al., Structural Basis of Protection against H7N9 Influenza Virus by Human Anti-N9 Neuraminidase Antibodies. Cell Host Microbe (2019)
- Release Date
- 2019-12-04
- Peptides
- Neuraminidase: ADGJ
NA-63 Fab light chain: BEHK
NA-63 Fab heavy chain: CFIL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BD
BG
BJ
BB
EE
EH
EK
EC
FF
FI
FL
F