SMTL ID : 6pzq.1

Structure of the human respiratory syncytial virus M2-1 protein in complex with a short positive-sense gene-end RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

2 x G- U- U- A- A- U: RNA (5'-R(P*GP*UP*UP*AP*AP*U)-3')(Non-covalent)

G-U-U-A-A-U.1: 16 residues within 4Å: Chain A: N.5, P.6, C.7, K.8, F.9, C.21, F.23 Chain B: I.173 Ligands: A-G-U-U-A-A-U.2, A-G-U-U-A-A-U.2, A-G-U-U-A-A-U.2, A-G-U-U-A-A-U.2, A-G-U-U-A-A-U.2, A-G-U-U-A-A-U.2, A-G-U-U-A-A-U.2, ZN.3 Protein-ligand interaction information (PLIP) not available G-U-U-A-A-U.2: 7 residues within 4Å: Chain A: R.4, H.22 Ligands: G-U-U-A-A-U.1, G-U-U-A-A-U.1, G-U-U-A-A-U.1, G-U-U-A-A-U.1, G-U-U-A-A-U.1 Protein-ligand interaction information (PLIP) not available

4 x ZN: ZINC ION(Non-covalent)

ZN.3: 6 residues within 4Å: Chain A: C.7, F.9, C.15, C.21, H.25 Ligands: G-U-U-A-A-U.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.15, A:C.21, A:H.25 ZN.4: 6 residues within 4Å: Chain B: C.7, F.9, C.15, C.21, F.23, H.25 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.7, B:C.15, B:C.21, B:H.25 ZN.5: 5 residues within 4Å: Chain C: C.7, F.9, C.15, C.21, H.25 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.7, C:C.15, C:C.21, C:H.25 ZN.6: 6 residues within 4Å: Chain D: C.7, F.9, C.15, N.17, C.21, H.25 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.7, D:C.15, D:C.21, D:H.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, Y. et al., Structure of the Human Respiratory Syncytial Virus M2-1 Protein in Complex with a Short Positive-Sense Gene-End RNA. Structure (2020)

Release Date

2020-08-05

Peptides

Matrix M2-1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Matrix M2-1