SMTL ID : 6q0s.1

Crystal Structure of RSV strain B18537 Prefusion-stabilized glycoprotein F Variant DS-Cav1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

homo-trimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.496, N.500 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.500 NAG.2: 3 residues within 4Å: Chain A: N.27, T.29, K.465 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.27 NAG.6: 2 residues within 4Å: Chain B: N.496, N.500 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.500 NAG.7: 3 residues within 4Å: Chain B: N.27, T.29, K.465 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.27 NAG.11: 2 residues within 4Å: Chain C: N.496, N.500 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.500 NAG.12: 3 residues within 4Å: Chain C: N.27, T.29, K.465 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.27

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: N.426, N.428, R.429, G.446 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.426, A:N.428 Salt bridges: A:R.429 SO4.4: 3 residues within 4Å: Chain A: F.137, R.339 Chain C: F.140 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.137, A:F.137 Salt bridges: A:R.339 SO4.5: 2 residues within 4Å: Chain A: K.293, E.294 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.294 SO4.8: 4 residues within 4Å: Chain B: N.426, N.428, R.429, G.446 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.426, B:N.428 Salt bridges: B:R.429 SO4.9: 3 residues within 4Å: Chain A: F.140 Chain B: F.137, R.339 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.137, B:F.137 Salt bridges: B:R.339 SO4.10: 2 residues within 4Å: Chain B: K.293, E.294 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.294 SO4.13: 4 residues within 4Å: Chain C: N.426, N.428, R.429, G.446 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.426, C:N.428 Salt bridges: C:R.429 SO4.14: 3 residues within 4Å: Chain B: F.140 Chain C: F.137, R.339 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:F.137, C:F.137 Salt bridges: C:R.339 SO4.15: 2 residues within 4Å: Chain C: K.293, E.294 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.294

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joyce, M.G. et al., Crystal Structure and Immunogenicity of the DS-Cav1-Stabilized Fusion Glycoprotein From Respiratory Syncytial Virus Subtype B. Pathog Immun (2019)

Release Date

2020-01-22

Peptides

Fusion glycoprotein F0: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
F

C
F

Fusion glycoprotein F0