SMTL ID : 6q1q.1

A hypothetical aminotransferase from Mycobacterium tuberculosis, apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 12 residues within 4Å: Chain A: F.33, T.35, R.92, R.117, Y.155, R.187, S.254, S.255, M.256, T.257 Chain B: R.28 Ligands: EDO.5 19 PLIP interactions: 18 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:R.187 Hydrogen bonds: A:T.35, A:T.35, A:S.254, A:S.255, A:M.256, A:T.257, A:T.257 Water bridges: A:T.35, A:T.35, A:K.151, A:K.151, A:R.187, A:S.255 Salt bridges: A:R.92, A:R.117, A:K.151, A:R.187, B:R.28 CIT.2: 3 residues within 4Å: Chain A: L.67, P.68, R.71 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.68 Salt bridges: A:R.71

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: R.39, D.40, D.284, I.287, V.288 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.39 EDO.4: 3 residues within 4Å: Chain A: Y.181, Y.212, A.238 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.212 EDO.5: 6 residues within 4Å: Chain A: R.52, R.187, T.189, S.254, S.255 Ligands: CIT.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.52, A:T.189, A:S.255 Water bridges: A:T.35, A:R.52, A:K.151, A:S.188, A:S.255 EDO.6: 6 residues within 4Å: Chain B: A.150, K.151, T.152, S.154, Y.155, N.158 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.150, B:T.152, B:S.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Duan, L. et al., A hypothetical aminotransferase from Mycobacterium tuberculosis. To Be Published

Release Date

2020-09-23

Peptides

Probable amino acid aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable amino acid aminotransferase

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