SMTL ID : 6q3m.2 (3 other biounits)

Structure of CHD4 PHD2 - tandem chromodomains

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: C.23, T.25, C.26, S.28, C.49, R.51, C.52 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.23, A:C.26, A:C.49, A:C.52 ZN.2: 6 residues within 4Å: Chain A: C.11, V.13, C.14, H.31, H.33, C.34 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.14, A:H.31, A:C.34

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 12 residues within 4Å: Chain A: R.12, V.13, Y.30, C.34, L.35, N.36, P.50, R.51, R.97, L.120, E.123 Ligands: EDO.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.36, A:R.51

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: I.32, H.33, P.38, L.39, P.40, L.94 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.39 EDO.5: 9 residues within 4Å: Chain A: I.66, W.67, K.68, W.116, P.142, P.143, S.144, R.173, Y.174 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.143 EDO.6: 4 residues within 4Å: Chain A: D.85, T.88 Ligands: EDO.7, EDO.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.85 EDO.7: 4 residues within 4Å: Chain A: D.85, P.86 Ligands: EDO.6, EDO.8 No protein-ligand interaction detected (PLIP) EDO.8: 4 residues within 4Å: Chain A: D.85, N.87 Ligands: EDO.6, EDO.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.87 EDO.9: 5 residues within 4Å: Chain A: E.99, E.119, L.120, E.123 Ligands: PGE.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mancini, E.J. et al., Structure of histone readers. To Be Published

Release Date

2019-12-25

Peptides

Chromodomain-helicase-DNA-binding protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Chromodomain-helicase-DNA-binding protein 4

Related Entries With Identical Sequence