SMTL ID : 6q3w.3 (3 other biounits)

Structure of human galactokinase 1 bound with Ethyl 1-(2-pyrazinyl)-4-piperidinecarboxylate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

1 x GAL: beta-D-galactopyranose(Non-covalent)

GAL.1: 12 residues within 4Å: Chain A: R.36, E.42, H.43, D.45, Y.46, C.181, G.182, M.184, D.185, Y.235, G.344, G.345 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:E.42, A:H.43, A:D.45, A:G.182, A:G.182, A:D.185, A:Y.235, A:G.345 Water bridges: A:R.36, A:T.44, A:D.185 Salt bridges: A:R.36

1 x HGE: ethyl 1-pyrazin-2-ylpiperidine-4-carboxylate(Non-covalent)

HGE.2: 7 residues within 4Å: Chain A: R.104, N.107, Y.108, F.176, A.177, G.178 Ligands: HFK.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.107

1 x HFK: 2-(1,3-benzoxazol-2-ylamino)spiro[1,6,7,8-tetrahydroquinazoline-4,1'-cyclohexane]-5-one(Non-covalent)

HFK.3: 17 residues within 4Å: Chain A: T.60, T.76, S.78, G.80, D.82, R.104, W.105, Y.108, V.128, S.130, L.134, G.135, S.140, S.141, L.144, R.227 Ligands: HGE.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:S.78, A:V.128, A:L.134, A:L.134 Hydrogen bonds: A:G.135 Water bridges: A:S.140, A:S.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mackinnon, S.R. et al., Structure of human galactokinase 1 bound with Ethyl 1-(2-pyrazinyl)-4-piperidinecarboxylate. To Be Published

Release Date

2019-01-23

Peptides

Galactokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Galactokinase

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