SMTL ID : 6q6q.1

Human aldehyde oxidase SNP G1269R

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.1: 8 residues within 4Å: Chain A: Q.113, C.114, G.115, C.117, C.149, R.150, C.151, M.753 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.114, A:C.117, A:C.149, A:C.151 FES.2: 10 residues within 4Å: Chain A: G.43, C.44, G.45, G.47, G.48, C.49, G.50, C.52, N.72, C.74 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.44, A:C.49, A:C.52, A:C.74 FES.8: 8 residues within 4Å: Chain B: Q.113, C.114, G.115, C.117, C.149, R.150, C.151, M.753 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.114, B:C.117, B:C.149, B:C.151 FES.9: 10 residues within 4Å: Chain B: G.43, C.44, G.45, G.47, G.48, C.49, G.50, C.52, N.72, C.74 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.44, B:C.49, B:C.52, B:C.74

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.3: 30 residues within 4Å: Chain A: G.46, G.47, G.48, P.263, V.264, I.265, M.266, G.267, N.268, T.269, S.270, V.271, A.308, L.312, L.344, A.345, I.349, A.353, S.354, G.357, H.358, I.360, S.361, H.363, D.365, S.366, D.367, L.411, A.437, L.438 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:A.345, A:I.349, A:I.349, A:I.349 Hydrogen bonds: A:V.264, A:M.266, A:G.267, A:N.268, A:T.269, A:T.269, A:S.270, A:V.271, A:A.345, A:S.354, A:H.363, A:D.367, A:D.367, A:L.411, A:L.411 FAD.10: 30 residues within 4Å: Chain B: G.46, G.47, G.48, P.263, V.264, I.265, M.266, G.267, N.268, T.269, S.270, V.271, A.308, L.312, L.344, A.345, I.349, A.353, S.354, G.357, H.358, I.360, S.361, H.363, D.365, S.366, D.367, L.411, A.437, L.438 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:A.345, B:I.349, B:I.349, B:I.349 Hydrogen bonds: B:V.264, B:M.266, B:G.267, B:N.268, B:T.269, B:T.269, B:T.269, B:S.270, B:V.271, B:A.345, B:S.354, B:H.358, B:H.363, B:D.367, B:D.367, B:L.411, B:L.411

8 x MLI: MALONATE ION(Non-functional Binders)

MLI.4: 8 residues within 4Å: Chain A: C.44, G.48, L.148, R.433, F.751, Y.1236, K.1237, I.1238 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.148, A:K.1237 Hydrogen bonds: A:Y.1236, A:I.1238 Salt bridges: A:R.433 MLI.5: 7 residues within 4Å: Chain A: R.32, K.33, T.38, D.601, M.603, P.604, L.605 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.601, A:L.605 Salt bridges: A:R.833 MLI.6: 5 residues within 4Å: Chain A: F.614, V.615, T.616, A.690, K.691 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.615 Hydrogen bonds: A:T.616 Salt bridges: A:K.691 MLI.7: 8 residues within 4Å: Chain A: Q.776, F.807, G.808, A.919, F.920, G.1087, G.1088, E.1270 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.776, A:E.1270 MLI.11: 8 residues within 4Å: Chain B: C.44, G.48, L.148, R.433, F.751, Y.1236, K.1237, I.1238 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.148, B:K.1237 Hydrogen bonds: B:Y.1236, B:I.1238 Salt bridges: B:R.433 MLI.12: 7 residues within 4Å: Chain B: R.32, K.33, T.38, D.601, M.603, P.604, L.605 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.601, B:L.605 Salt bridges: B:R.833 MLI.13: 5 residues within 4Å: Chain B: F.614, V.615, T.616, A.690, K.691 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.615 Hydrogen bonds: B:T.616 Salt bridges: B:K.691 MLI.14: 8 residues within 4Å: Chain B: Q.776, F.807, G.808, A.919, F.920, G.1087, G.1088, E.1270 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.776

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mota, C. et al., Human aldehyde oxidase (hAOX1): structure determination of the Moco-free form of the natural variant G1269R and biophysical studies of single nucleotide polymorphisms. Febs Open Bio (2019)

Release Date

2019-05-01

Peptides

Aldehyde oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Aldehyde oxidase