SMTL ID : 6q7p.1

Crystal structure of OE1.2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 14 residues within 4Å: Chain A: S.9, L.10, L.13, N.14, M.120, T.122, S.124, Q.128, A.129, F.132, L.133, L.136, I.138 Ligands: AC0.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.14, A:N.14, A:T.122, A:S.124, A:Q.128

1 x AC0: 1-PHENYLETHANONE(Covalent)

AC0.2: 10 residues within 4Å: Chain A: H.19, M.22, H.23, I.26, S.91, L.92, S.95, Q.128, F.132 Ligands: PGE.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.132, A:F.132

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: L.10, N.181, K.184 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.181 Water bridges: A:D.8, A:L.10, A:K.155, A:K.155 Salt bridges: A:K.184

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 1 residues within 4Å: Chain A: K.78 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 5 residues within 4Å: Chain A: D.8, L.10, G.11, T.12, D.180 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.8, A:L.10, A:D.180, H2O.2, H2O.2, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burke, A.J. et al., Design and evolution of an enzyme with a non-canonical organocatalytic mechanism. Nature (2019)

Release Date

2019-06-05

Peptides

OE1.2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

OE1.2