SMTL ID : 6q8j.1

Nterminal domain of human SMU1 in complex with LSP641

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x XS4: 1-~{tert}-butyl-3-[6-(3,5-dimethoxyphenyl)-2-[[1-[1-(phenylmethyl)piperidin-4-yl]-1,2,3-triazol-4-yl]methylamino]pyrido[2,3-d]pyrimidin-7-yl]urea(Non-covalent)

XS4.1: 10 residues within 4Å: Chain A: W.57, D.58, L.61, Q.62, Q.65, Y.78, L.85, A.93, L.97 Ligands: XS4.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.61, A:L.61, A:Q.62, A:Q.65 Hydrogen bonds: A:Q.62, A:Q.65, A:Y.78 Water bridges: A:W.57, A:Q.65, A:Q.65 XS4.2: 5 residues within 4Å: Chain A: D.58, E.90, A.93, S.96 Ligands: XS4.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.93 XS4.3: 10 residues within 4Å: Chain B: W.57, D.58, L.61, Q.62, Q.65, Y.78, L.85, A.93, L.97 Ligands: XS4.4 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.61, B:L.61, B:Q.62, B:Q.65 Hydrogen bonds: B:Q.62, B:Q.65 Water bridges: B:W.57, B:Q.65, B:Q.65 XS4.4: 5 residues within 4Å: Chain B: D.58, E.90, A.93, S.96 Ligands: XS4.3 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:A.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ashraf, U. et al., Destabilization of the human RED-SMU1 splicing complex as a basis for host-directed antiinfluenza strategy. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-05-22

Peptides

WD40 repeat-containing protein SMU1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

WD40 repeat-containing protein SMU1