SMTL ID : 6q8z.1 (3 other biounits)

Structure of human galactokinase 1 bound with N-(Cyclobutylmethyl)-1,5-dimethyl-1H-pyrazole-4-carboxamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x GAL: beta-D-galactopyranose(Non-covalent)

GAL.1: 12 residues within 4Å: Chain A: R.37, E.43, H.44, D.46, Y.47, C.182, G.183, M.185, D.186, Y.236, G.345, G.346 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:E.43, A:H.44, A:D.46, A:G.183, A:G.183, A:Y.236, A:G.346 Water bridges: A:R.37, A:R.37, A:R.37, A:T.45, A:D.186, A:D.186, A:Q.187 Salt bridges: A:R.37

1 x HFK: 2-(1,3-benzoxazol-2-ylamino)spiro[1,6,7,8-tetrahydroquinazoline-4,1'-cyclohexane]-5-one(Non-covalent)

HFK.2: 16 residues within 4Å: Chain A: T.61, T.77, S.79, G.81, D.83, R.105, W.106, Y.109, V.129, S.131, L.135, G.136, S.141, S.142, L.145, R.228 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.106, A:V.129, A:L.135, A:L.135, A:L.145 Hydrogen bonds: A:G.136, A:S.141, A:S.141 Water bridges: A:R.105, A:S.141, A:S.142

1 x HR5: ~{N}-(cyclobutylmethyl)-1,5-dimethyl-pyrazole-4-carboxamide(Non-covalent)

HR5.3: 10 residues within 4Å: Chain A: V.9, L.13, A.31, V.32, S.33, V.62, D.385, K.388, V.389, L.390 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.9, A:L.13, A:A.31, A:V.62, A:L.390 Hydrogen bonds: A:S.33, A:V.389

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mackinnon, S.R. et al., Structure of human galactokinase 1 bound with N-(Cyclobutylmethyl)-1,5-dimethyl-1H-pyrazole-4-carboxamide. To Be Published

Release Date

2019-01-23

Peptides

Galactokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Galactokinase

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