SMTL ID : 6qaj.1

Structure of the tripartite motif of KAP1/TRIM28

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.196, V.198, C.199, C.219, C.222 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.196, A:C.199, A:C.219, A:C.222 ZN.2: 5 residues within 4Å: Chain A: C.214, H.216, C.248, V.250, C.251 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.214, A:H.216, A:C.248, A:C.251 ZN.3: 6 residues within 4Å: Chain A: C.340, V.342, H.343, C.360, D.362, C.363 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.340, A:H.343, A:C.360, A:C.363 ZN.4: 5 residues within 4Å: Chain A: C.352, S.354, C.355, H.368, H.371 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.352, A:S.354, A:C.355, A:H.368, A:H.371 ZN.5: 5 residues within 4Å: Chain B: C.352, S.354, C.355, H.368, H.371 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.352, B:C.355, B:H.368, B:H.371 ZN.6: 5 residues within 4Å: Chain B: C.340, V.342, H.343, C.360, C.363 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.340, B:H.343, B:C.360, B:C.363 ZN.7: 5 residues within 4Å: Chain B: C.196, V.198, C.199, C.219, C.222 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.196, B:C.199, B:C.219, B:C.222 ZN.8: 5 residues within 4Å: Chain B: C.214, H.216, C.248, V.250, C.251 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.214, B:H.216, B:C.248, B:C.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stoll, G.A. et al., Structure of KAP1 tripartite motif identifies molecular interfaces required for retroelement silencing. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-07-24

Peptides

Endolysin,Transcription intermediary factor 1-beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Endolysin,Transcription intermediary factor 1-beta