SMTL ID : 6qbw.1

Structure of the HTLV-2 integrase catalytic core domain in complex with calcium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-trimer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: D.13, V.14, D.70 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.13, A:V.14, A:D.70, H2O.1, H2O.1 CA.2: 3 residues within 4Å: Chain B: D.13, V.14, D.70 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.13, B:V.14, B:D.70, H2O.2, H2O.2 CA.3: 3 residues within 4Å: Chain C: D.13, V.14, D.70 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.13, C:V.14, C:D.70, H2O.3, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barski, M.S. et al., Cryo-EM structure of the deltaretroviral intasome in complex with the PP2A regulatory subunit B56 gamma. Nat Commun (2020)

Release Date

2020-09-30

Peptides

integrase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

integrase

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