SMTL ID : 6qcn.1 (1 other biounit)

Human Sirt2 in complex with ADP-ribose and the inhibitor quercetin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.143, C.148, C.169, C.172 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.143, A:C.148, A:C.169, A:C.172

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.2: 21 residues within 4Å: Chain A: G.32, A.33, G.34, T.37, D.43, F.44, R.45, Y.52, Q.115, H.135, F.183, G.209, T.210, S.211, V.214, N.234, K.235, E.236, G.270, E.271, C.272 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:A.33, A:G.34, A:T.37, A:T.37, A:F.44, A:R.45, A:Y.52, A:Y.52, A:Q.115, A:H.135, A:G.209, A:T.210, A:S.211, A:S.211, A:N.234, A:K.235, A:E.236, A:E.236, A:C.272 Salt bridges: A:R.45, A:R.45, A:R.45

1 x QUE: 3,5,7,3',4'-PENTAHYDROXYFLAVONE(Non-covalent)

QUE.3: 2 residues within 4Å: Chain A: Y.62, E.68 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

You, W. et al., Structural basis for the activation and inhibition of Sirtuin 6 by quercetin and its derivatives. Sci Rep (2019)

Release Date

2019-12-25

Peptides

NAD-dependent protein deacetylase sirtuin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacetylase sirtuin-2

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