SMTL ID : 6qe0.1

Structure of E.coli RlmJ in complex with a bisubstrate analogue (BA2)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

1 x HZ2: (2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[2-[[9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-6-yl]amino]ethyl]amino]-2-azanyl-butanoic acid(Non-covalent)

HZ2.1: 20 residues within 4Å: Chain A: H.12, A.13, D.18, K.21, H.22, D.43, H.45, A.46, G.47, Y.51, G.102, S.103, L.165, D.167, P.169, Y.170, E.171, W.198, P.200, M.238 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:K.21, A:K.21, A:S.103, A:S.103, A:D.167, A:D.167, A:P.169 Water bridges: A:D.43, A:P.168 Salt bridges: A:K.21, A:H.22, A:D.167 pi-Stacking: A:H.12, A:H.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oerum, S. et al., Bisubstrate analogues as structural tools to investigate m6A methyltransferase active sites. Rna Biol. (2019)

Release Date

2019-03-27

Peptides

Ribosomal RNA large subunit methyltransferase J: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosomal RNA large subunit methyltransferase J

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