SMTL ID : 6qfo.1

EngBF DARPin Fusion 9b 3G124

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: G.775, N.802, A.803, D.915 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.775, A:A.803, A:D.915, H2O.1, H2O.5 MN.2: 5 residues within 4Å: Chain A: D.268, N.270, D.272, A.274, D.279 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.268, A:D.272, A:A.274, A:D.279, H2O.8 MN.3: 3 residues within 4Å: Chain A: E.394, D.419, H.966 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.394, A:D.419, A:H.966, H2O.2, H2O.4, H2O.10 MN.4: 5 residues within 4Å: Chain A: G.941, E.943, D.989, W.992, D.1109 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.941, A:E.943, A:D.989, A:W.992, H2O.2

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.5: 6 residues within 4Å: Chain A: Y.924, N.940, G.941, F.942, E.943, N.944 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.941, A:E.943, A:N.944

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.6: 2 residues within 4Å: Chain A: P.207, W.490 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ernst, P. et al., Structural analysis of biological targets by host:guest crystal lattice engineering. Sci Rep (2019)

Release Date

2019-11-06

Peptides

PEGA domain-containing protein,PEGA domain-containing protein,EngBF DARPin fusion 9b 3G124: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PEGA domain-containing protein,PEGA domain-containing protein,EngBF DARPin fusion 9b 3G124