SMTL ID : 6qgi.1

Crystal structure of VP5 from Haloarchaeal pleomorphic virus 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: D.393, G.395, N.396 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.393 Hydrogen bonds: A:D.393, A:D.393

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: F.143, L.144, M.145, L.206, P.211, T.212 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: G.198, L.199, S.226 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: N.55, L.223, W.228 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: S.284, A.286 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

El Omari, K. et al., The structure of a prokaryotic viral envelope protein expands the landscape of membrane fusion proteins. Nat Commun (2019)

Release Date

2019-02-27

Peptides

VP5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VP5