SMTL ID : 6qgq.4 (3 other biounits)

Crystal structure of APT1 C2S mutant bound to palmitic acid.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: D.35, G.39, W.40, A.43, S.213 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.213 Water bridges: A:D.35, A:W.40

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.2: 13 residues within 4Å: Chain A: L.33, I.78, G.80, L.81, S.82, P.83, S.85, S.122, Q.123, W.148, L.179, V.180, F.184 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.78, A:L.81, A:W.148, A:V.180, A:F.184 Hydrogen bonds: A:L.33, A:Q.123, A:Q.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abrami, L. et al., Palmitoylated acyl protein thioesterase APT2 deforms membranes to extract substrate acyl chains. Nat.Chem.Biol. (2021)

Release Date

2020-02-05

Peptides

Acyl-protein thioesterase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Acyl-protein thioesterase 1

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