SMTL ID : 6qjc.1

Dimethyl disulfide inhibited sulfur oxygenase reductase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-24-mer

Ligands

24 x FE: FE (III) ION(Non-covalent)

FE.1: 3 residues within 4Å: Chain A: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.86, A:H.90, A:E.114, H2O.6, H2O.7 FE.2: 3 residues within 4Å: Chain B: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.86, B:H.90, B:E.114, H2O.15, H2O.16 FE.3: 3 residues within 4Å: Chain C: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.86, C:H.90, C:E.114, H2O.24, H2O.24 FE.4: 3 residues within 4Å: Chain D: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.86, D:H.90, D:E.114, H2O.33, H2O.33 FE.5: 3 residues within 4Å: Chain E: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:H.86, E:H.90, E:E.114, H2O.42, H2O.42 FE.6: 3 residues within 4Å: Chain F: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:H.86, F:H.90, F:E.114, H2O.50, H2O.51 FE.7: 3 residues within 4Å: Chain G: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:H.86, G:H.90, G:E.114, H2O.59, H2O.59 FE.8: 3 residues within 4Å: Chain H: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:H.86, H:H.90, H:E.114, H2O.68, H2O.68 FE.9: 3 residues within 4Å: Chain I: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:H.86, I:H.90, I:E.114, H2O.77, H2O.78 FE.10: 3 residues within 4Å: Chain J: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:H.86, J:H.90, J:E.114, H2O.85, H2O.86 FE.11: 3 residues within 4Å: Chain K: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:H.86, K:H.90, K:E.114, H2O.94, H2O.95 FE.12: 3 residues within 4Å: Chain L: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain L, 2 Ligand-Water interactions Metal complexes: L:H.86, L:H.90, L:E.114, H2O.103, H2O.103 FE.13: 3 residues within 4Å: Chain M: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:H.86, M:H.90, M:E.114, H2O.113, H2O.113 FE.14: 3 residues within 4Å: Chain N: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:H.86, N:H.90, N:E.114, H2O.121, H2O.122 FE.15: 3 residues within 4Å: Chain O: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:H.86, O:H.90, O:E.114, H2O.130, H2O.130 FE.16: 3 residues within 4Å: Chain P: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain P, 2 Ligand-Water interactions Metal complexes: P:H.86, P:H.90, P:E.114, H2O.139, H2O.139 FE.17: 3 residues within 4Å: Chain Q: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain Q, 2 Ligand-Water interactions Metal complexes: Q:H.86, Q:H.90, Q:E.114, H2O.148, H2O.148 FE.18: 3 residues within 4Å: Chain R: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain R, 2 Ligand-Water interactions Metal complexes: R:H.86, R:H.90, R:E.114, H2O.156, H2O.157 FE.19: 3 residues within 4Å: Chain S: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain S, 2 Ligand-Water interactions Metal complexes: S:H.86, S:H.90, S:E.114, H2O.165, H2O.165 FE.20: 3 residues within 4Å: Chain T: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain T, 2 Ligand-Water interactions Metal complexes: T:H.86, T:H.90, T:E.114, H2O.174, H2O.174 FE.21: 3 residues within 4Å: Chain U: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain U, 2 Ligand-Water interactions Metal complexes: U:H.86, U:H.90, U:E.114, H2O.183, H2O.184 FE.22: 3 residues within 4Å: Chain V: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain V, 2 Ligand-Water interactions Metal complexes: V:H.86, V:H.90, V:E.114, H2O.192, H2O.192 FE.23: 3 residues within 4Å: Chain W: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain W, 2 Ligand-Water interactions Metal complexes: W:H.86, W:H.90, W:E.114, H2O.200, H2O.201 FE.24: 3 residues within 4Å: Chain X: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain X, 2 Ligand-Water interactions Metal complexes: X:H.86, X:H.90, X:E.114, H2O.209, H2O.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frazao, C. et al., Multiple sulfane modifications in active-site cysteine thiols of two sulfur oxygenase reductases and analysis of substrate/product channels. To Be Published

Release Date

2020-02-05

Peptides

Sulfur oxygenase/reductase: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

I
A

J
B

K
C

L
D

M
A

N
B

O
C

P
D

Q
A

R
B

S
C

T
D

U
A

V
B

W
C

X
D

Sulfur oxygenase/reductase