SMTL ID : 6qkc.1

GluA1/2 In complex with auxiliary subunit gamma-8

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 4.40 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x E2Q: 6-nitro-2,3-bis(oxidanylidene)-1,4-dihydrobenzo[f]quinoxaline-7-sulfonamide(Non-covalent)

E2Q.1: 9 residues within 4Å: Chain A: Y.472, P.500, L.501, T.502, R.507, T.708, E.727, M.730, Y.754 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.472, A:Y.472, A:P.500, A:T.502, A:R.507, A:R.507, A:Y.754 pi-Stacking: A:Y.472, A:Y.472 E2Q.5: 9 residues within 4Å: Chain B: Y.471, P.499, L.500, T.501, R.506, T.707, E.726, M.729, Y.753 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:P.499, B:T.501, B:R.506, B:Y.753 pi-Stacking: B:Y.471, B:Y.471 E2Q.6: 9 residues within 4Å: Chain C: Y.472, P.500, L.501, T.502, R.507, T.708, E.727, M.730, Y.754 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:Y.472, C:Y.472, C:P.500, C:T.502, C:R.507, C:R.507, C:Y.754 pi-Stacking: C:Y.472, C:Y.472 E2Q.10: 9 residues within 4Å: Chain D: Y.471, P.499, L.500, T.501, R.506, T.707, E.726, M.729, Y.753 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:P.499, D:T.501, D:R.506, D:S.675, D:S.675, D:Y.753 pi-Stacking: D:Y.471, D:Y.471

12 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.2: 1 residues within 4Å: Chain A: V.552 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.552 OLC.3: 2 residues within 4Å: Chain A: F.537 Ligands: OLC.15 No protein-ligand interaction detected (PLIP) OLC.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) OLC.7: 1 residues within 4Å: Chain C: V.552 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:V.552 OLC.8: 2 residues within 4Å: Chain C: F.537 Ligands: OLC.12 No protein-ligand interaction detected (PLIP) OLC.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) OLC.11: 2 residues within 4Å: Chain E: Y.46 Ligands: OLC.12 No protein-ligand interaction detected (PLIP) OLC.12: 2 residues within 4Å: Ligands: OLC.8, OLC.11 No protein-ligand interaction detected (PLIP) OLC.13: 2 residues within 4Å: Chain E: W.87, K.102 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:W.87, E:K.102 OLC.14: 2 residues within 4Å: Chain F: Y.46 Ligands: OLC.15 No protein-ligand interaction detected (PLIP) OLC.15: 2 residues within 4Å: Ligands: OLC.3, OLC.14 No protein-ligand interaction detected (PLIP) OLC.16: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herguedas, B. et al., Architecture of the heteromeric GluA1/2 AMPA receptor in complex with the auxiliary subunit TARP gamma 8. Science (2019)

Release Date

2019-03-27

Peptides

Glutamate receptor 1: AC
Glutamate receptor 2: BD
Voltage-dependent calcium channel gamma-8 subunit: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

E
I

F
J

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Glutamate receptor 1

Glutamate receptor 2

Voltage-dependent calcium channel gamma-8 subunit

Related Entries With Identical Sequence