SMTL ID : 6qkz.1

Full length GluA1/2-gamma8 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 3 residues within 4Å: Chain A: N.53, S.55, D.56 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 3 residues within 4Å: Chain C: N.53, S.55, D.56 No protein-ligand interaction detected (PLIP)

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 2 residues within 4Å: Chain A: Y.130, N.239 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 1 residues within 4Å: Chain A: N.353 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain B: G.211, Y.212, N.235 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 2 residues within 4Å: Chain C: Y.130, N.239 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 1 residues within 4Å: Chain C: N.353 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 3 residues within 4Å: Chain D: G.211, Y.212, N.235 No protein-ligand interaction detected (PLIP)

4 x E2Q: 6-nitro-2,3-bis(oxidanylidene)-1,4-dihydrobenzo[f]quinoxaline-7-sulfonamide(Non-covalent)

E2Q.9: 3 residues within 4Å: Chain A: P.482, L.483, T.484 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.482, A:T.484 E2Q.11: 3 residues within 4Å: Chain B: P.478, L.479, T.480 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.478, B:T.480 E2Q.12: 3 residues within 4Å: Chain C: P.482, L.483, T.484 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:P.482, C:T.484 E2Q.14: 3 residues within 4Å: Chain D: P.478, L.479, T.480 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:P.478, D:T.480

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 1 residues within 4Å: Chain A: N.247 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.247 NAG.13: 1 residues within 4Å: Chain C: N.247 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herguedas, B. et al., Architecture of the heteromeric GluA1/2 AMPA receptor in complex with the auxiliary subunit TARP gamma 8. Science (2019)

Release Date

2019-03-27

Peptides

GluA1: AC
Glutamate receptor 2: BD
Voltage-dependent calcium channel gamma-8 subunit: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

E
I

F
J

Membrane

We predict this structure to be a membrane protein.
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GluA1

Glutamate receptor 2

Voltage-dependent calcium channel gamma-8 subunit