SMTL ID : 6qly.2 (1 other biounit)

IDOL FERM domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: V.229, Q.230, M.231, I.270, H.274, R.292 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.229 Salt bridges: A:H.274, A:R.292 SO4.4: 6 residues within 4Å: Chain B: V.229, Q.230, M.231, I.270, H.274, R.292 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.229 Salt bridges: B:H.274, B:R.292 SO4.7: 6 residues within 4Å: Chain C: V.229, Q.230, M.231, I.270, H.274, R.292 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:V.229 Salt bridges: C:H.274, C:R.292 SO4.10: 6 residues within 4Å: Chain D: V.229, Q.230, M.231, I.270, H.274, R.292 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:V.229 Salt bridges: D:H.274, D:R.292

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: Q.127, G.131, D.132, T.168, S.169, Q.170 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.127, A:Q.127 EDO.3: 3 residues within 4Å: Chain A: S.169, Q.170, A.171 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.170 EDO.5: 6 residues within 4Å: Chain B: Q.127, G.131, D.132, T.168, S.169, Q.170 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.127, B:Q.127 EDO.6: 3 residues within 4Å: Chain B: S.169, Q.170, A.171 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.170 EDO.8: 6 residues within 4Å: Chain C: Q.127, G.131, D.132, T.168, S.169, Q.170 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.127, C:Q.127 EDO.9: 3 residues within 4Å: Chain C: S.169, Q.170, A.171 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.170 EDO.11: 6 residues within 4Å: Chain D: Q.127, G.131, D.132, T.168, S.169, Q.170 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Q.127, D:Q.127 EDO.12: 3 residues within 4Å: Chain D: S.169, Q.170, A.171 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Q.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martinelli, L. et al., Structural analysis of the LDL receptor-interacting FERM domain in the E3 ubiquitin ligase IDOL reveals an obscured substrate-binding site. J.Biol.Chem. (2020)

Release Date

2020-02-19

Peptides

E3 ubiquitin-protein ligase MYLIP: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E3 ubiquitin-protein ligase MYLIP

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