SMTL ID : 6qmf.1

Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis in complex with 5-[3-(1H-indol-3-yl)propoxy]-1-phenyl-1H-pyrazole-4-carboxylic acid at 1.8A resolution.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-hexamer

Ligands

6 x EQ5: 3-indol-1-ylpropanoic acid(Non-covalent)

EQ5.1: 10 residues within 4Å: Chain A: P.9, G.10, S.11, F.12, G.18, H.19, I.22, G.90, R.92, T.120 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.22, A:R.92, A:T.120 Hydrogen bonds: A:S.11, A:F.12 Salt bridges: A:H.19 pi-Stacking: A:H.19, A:H.19 EQ5.3: 10 residues within 4Å: Chain B: P.9, G.10, S.11, F.12, G.18, H.19, I.22, G.90, R.92, T.120 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.22, B:R.92, B:T.120 Hydrogen bonds: B:S.11, B:F.12 Salt bridges: B:H.19 pi-Stacking: B:H.19, B:H.19 EQ5.5: 10 residues within 4Å: Chain C: P.9, G.10, S.11, F.12, G.18, H.19, I.22, G.90, R.92, T.120 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:I.22, C:R.92, C:T.120 Hydrogen bonds: C:S.11, C:F.12 Salt bridges: C:H.19 pi-Stacking: C:H.19, C:H.19 EQ5.7: 10 residues within 4Å: Chain D: P.9, G.10, S.11, F.12, G.18, H.19, I.22, G.90, R.92, T.120 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:I.22, D:R.92, D:T.120 Hydrogen bonds: D:S.11, D:F.12 Salt bridges: D:H.19 pi-Stacking: D:H.19, D:H.19 EQ5.9: 10 residues within 4Å: Chain E: P.9, G.10, S.11, F.12, G.18, H.19, I.22, G.90, R.92, T.120 8 PLIP interactions: 8 interactions with chain E Hydrophobic interactions: E:I.22, E:R.92, E:T.120 Hydrogen bonds: E:S.11, E:F.12 Salt bridges: E:H.19 pi-Stacking: E:H.19, E:H.19 EQ5.11: 10 residues within 4Å: Chain F: P.9, G.10, S.11, F.12, G.18, H.19, I.22, G.90, R.92, T.120 8 PLIP interactions: 8 interactions with chain F Hydrophobic interactions: F:I.22, F:R.92, F:T.120 Hydrogen bonds: F:S.11, F:F.12 Salt bridges: F:H.19 pi-Stacking: F:H.19, F:H.19

6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain C: E.98 Ligands: DMS.4, DMS.6 No protein-ligand interaction detected (PLIP) DMS.4: 3 residues within 4Å: Chain A: E.98 Ligands: DMS.2, DMS.6 No protein-ligand interaction detected (PLIP) DMS.6: 3 residues within 4Å: Chain B: E.98 Ligands: DMS.2, DMS.4 No protein-ligand interaction detected (PLIP) DMS.8: 3 residues within 4Å: Chain F: E.98 Ligands: DMS.10, DMS.12 No protein-ligand interaction detected (PLIP) DMS.10: 3 residues within 4Å: Chain D: E.98 Ligands: DMS.8, DMS.12 No protein-ligand interaction detected (PLIP) DMS.12: 3 residues within 4Å: Chain E: E.98 Ligands: DMS.8, DMS.10 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blaszczyk, M. et al., Fragment linking applied to the discovery of Mycobacterium tuberculosis phosphopantetheine adenylyltransferase inhibitors. To Be Published

Release Date

2020-02-26

Peptides

Phosphopantetheine adenylyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Phosphopantetheine adenylyltransferase

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