SMTL ID : 6qmh.1

Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis in complex with 3-(1H-indol-3-yl)propanoic acid at 1.6A resolution.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-hexamer

Ligands

6 x EP8: 5-[3-(1~{H}-indol-3-yl)propoxy]-1-phenyl-pyrazole-4-carboxylic acid(Non-covalent)

EP8.1: 19 residues within 4Å: Chain A: C.8, P.9, F.12, T.16, G.18, H.19, I.22, F.23, K.89, G.90, R.92, D.96, E.100, T.120, Y.124, S.125, V.127, S.128, S.129 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.12, A:I.22, A:I.22, A:K.89, A:R.92, A:Y.124 Hydrogen bonds: A:P.9, A:T.16, A:S.129 Water bridges: A:K.89, A:S.129 Salt bridges: A:R.92 pi-Stacking: A:H.19, A:H.19 EP8.2: 19 residues within 4Å: Chain B: C.8, P.9, F.12, T.16, G.18, H.19, I.22, F.23, K.89, G.90, R.92, D.96, E.100, T.120, Y.124, S.125, V.127, S.128, S.129 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:F.12, B:I.22, B:I.22, B:K.89, B:R.92, B:Y.124 Hydrogen bonds: B:P.9, B:T.16, B:S.129 Water bridges: B:K.89, B:S.129 Salt bridges: B:R.92 pi-Stacking: B:H.19, B:H.19 EP8.3: 19 residues within 4Å: Chain C: C.8, P.9, F.12, T.16, G.18, H.19, I.22, F.23, K.89, G.90, R.92, D.96, E.100, T.120, Y.124, S.125, V.127, S.128, S.129 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:F.12, C:I.22, C:I.22, C:K.89, C:R.92, C:Y.124 Hydrogen bonds: C:P.9, C:T.16, C:S.129 Water bridges: C:K.89, C:S.129 Salt bridges: C:R.92 pi-Stacking: C:H.19, C:H.19 EP8.4: 19 residues within 4Å: Chain D: C.8, P.9, F.12, T.16, G.18, H.19, I.22, F.23, K.89, G.90, R.92, D.96, E.100, T.120, Y.124, S.125, V.127, S.128, S.129 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:F.12, D:I.22, D:I.22, D:K.89, D:R.92, D:Y.124 Hydrogen bonds: D:P.9, D:S.129 Water bridges: D:K.89, D:S.129 Salt bridges: D:R.92 pi-Stacking: D:H.19, D:H.19 EP8.5: 19 residues within 4Å: Chain E: C.8, P.9, F.12, T.16, G.18, H.19, I.22, F.23, K.89, G.90, R.92, D.96, E.100, T.120, Y.124, S.125, V.127, S.128, S.129 13 PLIP interactions: 13 interactions with chain E Hydrophobic interactions: E:F.12, E:I.22, E:I.22, E:K.89, E:R.92, E:Y.124 Hydrogen bonds: E:P.9, E:S.129 Water bridges: E:K.89, E:S.129 Salt bridges: E:R.92 pi-Stacking: E:H.19, E:H.19 EP8.6: 19 residues within 4Å: Chain F: C.8, P.9, F.12, T.16, G.18, H.19, I.22, F.23, K.89, G.90, R.92, D.96, E.100, T.120, Y.124, S.125, V.127, S.128, S.129 13 PLIP interactions: 13 interactions with chain F Hydrophobic interactions: F:F.12, F:I.22, F:I.22, F:K.89, F:R.92, F:Y.124 Hydrogen bonds: F:P.9, F:S.129 Water bridges: F:K.89, F:S.129 Salt bridges: F:R.92 pi-Stacking: F:H.19, F:H.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blaszczyk, M. et al., Fragment linking applied to the discovery of Mycobacterium tuberculosis phosphopantetheine adenylyltransferase inhibitors. To Be Published

Release Date

2020-02-26

Peptides

Phosphopantetheine adenylyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Phosphopantetheine adenylyltransferase

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