SMTL ID : 6qmo.1

Death-associated Protein Kinase 1 (DAPK1) catalytic and auto-regulatory domains with S289E and S308A mutations

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: K.49, R.51, K.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.49, A:R.51 GOL.2: 6 residues within 4Å: Chain A: I.180, F.181, G.182, I.191, Y.194, L.229 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.180, A:G.182, A:I.191 GOL.3: 4 residues within 4Å: Chain A: N.78, Q.125, N.128, R.159 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.78, A:N.78, A:N.128 GOL.4: 5 residues within 4Å: Chain A: L.40, Q.41, Y.42, E.97, L.98 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.41, A:L.98 GOL.5: 6 residues within 4Å: Chain A: A.43, I.80, E.97, L.98, V.99, I.163 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.97, A:V.99, A:V.99 GOL.6: 4 residues within 4Å: Chain A: R.8, Y.15, E.35, S.37 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.8, A:R.8, A:E.35, A:S.37 Water bridges: A:S.37

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 2 residues within 4Å: Chain A: K.45, E.67 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: K.264, R.266 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: E.238, R.256 Ligand excluded by PLIP CL.10: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: E.103, D.106 Ligand excluded by PLIP

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.12: 7 residues within 4Å: Chain A: H.134, S.135, L.199, M.203, T.268, I.269, Q.270 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.134, A:I.269, A:Q.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huart, A.-S. et al., Molecular mechanisms behind DAPK regulation: how phosphorylation switches work. To Be Published

Release Date

2019-08-28

Peptides

Death-associated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Death-associated protein kinase 1