SMTL ID : 6qn4.1

Death-associated Protein Kinase 1 (DAPK1) catalytic and auto-regulatory domains with S289E and S308E mutations

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

7 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: Q.26, K.45, I.47, V.59, E.67, D.164, G.166 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.59 Water bridges: A:D.164 Salt bridges: A:K.45 ACT.2: 7 residues within 4Å: Chain A: G.174, P.196, L.197, G.198, E.200, P.263, K.264 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.200 ACT.3: 2 residues within 4Å: Chain A: R.50, S.60 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.50 ACT.4: 5 residues within 4Å: Chain A: H.134, S.135, Q.137, L.199, Q.270 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.199 Hydrogen bonds: A:Q.137, A:Q.270 ACT.5: 4 residues within 4Å: Chain A: Y.237, E.238, F.239, R.256 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:R.256 ACT.6: 6 residues within 4Å: Chain A: K.45, I.80, L.96, I.163, D.164 Ligands: GOL.9 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.164 Hydrogen bonds: A:D.164 Water bridges: A:F.165 Salt bridges: A:K.45 ACT.7: 4 residues within 4Å: Chain A: F.177, K.178, N.179, Y.194 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.177, A:Y.194 Hydrogen bonds: A:N.179

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 4 residues within 4Å: Chain A: L.82, H.83, E.84 Ligands: GOL.11 No protein-ligand interaction detected (PLIP) GOL.9: 8 residues within 4Å: Chain A: V.30, A.43, I.80, E.97, L.98, V.99, M.149 Ligands: ACT.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.97, A:V.99 GOL.10: 3 residues within 4Å: Chain A: E.97, R.159, K.161 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.159, A:R.159, A:K.161, A:K.161 GOL.11: 7 residues within 4Å: Chain A: L.71, K.72, I.74, Q.75, T.81, L.82 Ligands: GOL.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.82

1 x NA: SODIUM ION(Non-functional Binders)

NA.12: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huart, A.-S. et al., Molecular mechanisms behind DAPK regulation: how phosphorylation switches work. To Be Published

Release Date

2019-08-28

Peptides

Death-associated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Death-associated protein kinase 1