SMTL ID : 6qne.1

Y102G mutated sulfur oxygenase reductase from Acidianus ambivalens

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-24-mer

Ligands

24 x FE: FE (III) ION(Non-covalent)

FE.1: 3 residues within 4Å: Chain A: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.86, A:H.90, A:E.114, H2O.5, H2O.5 FE.2: 3 residues within 4Å: Chain B: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.86, B:H.90, B:E.114, H2O.9, H2O.10 FE.3: 3 residues within 4Å: Chain C: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.86, C:H.90, C:E.114, H2O.14, H2O.14 FE.4: 3 residues within 4Å: Chain D: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.86, D:H.90, D:E.114, H2O.19, H2O.19 FE.5: 3 residues within 4Å: Chain E: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:H.86, E:H.90, E:E.114, H2O.24, H2O.24 FE.6: 3 residues within 4Å: Chain F: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:H.86, F:H.90, F:E.114, H2O.28, H2O.28 FE.7: 3 residues within 4Å: Chain G: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:H.86, G:H.90, G:E.114, H2O.33, H2O.33 FE.8: 3 residues within 4Å: Chain H: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:H.86, H:H.90, H:E.114, H2O.38, H2O.38 FE.9: 3 residues within 4Å: Chain I: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:H.86, I:H.90, I:E.114, H2O.42, H2O.42 FE.10: 3 residues within 4Å: Chain J: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:H.86, J:H.90, J:E.114, H2O.47, H2O.48 FE.11: 3 residues within 4Å: Chain K: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:H.86, K:H.90, K:E.114, H2O.52, H2O.52 FE.12: 3 residues within 4Å: Chain L: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain L, 2 Ligand-Water interactions Metal complexes: L:H.86, L:H.90, L:E.114, H2O.56, H2O.57 FE.13: 3 residues within 4Å: Chain M: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:H.86, M:H.90, M:E.114, H2O.61, H2O.61 FE.14: 3 residues within 4Å: Chain N: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:H.86, N:H.90, N:E.114, H2O.65, H2O.66 FE.15: 3 residues within 4Å: Chain O: H.86, H.90, E.114 6 PLIP interactions: 4 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:H.86, O:H.90, O:E.114, O:E.114, H2O.71, H2O.71 FE.16: 3 residues within 4Å: Chain P: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain P, 2 Ligand-Water interactions Metal complexes: P:H.86, P:H.90, P:E.114, H2O.75, H2O.75 FE.17: 3 residues within 4Å: Chain Q: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain Q, 2 Ligand-Water interactions Metal complexes: Q:H.86, Q:H.90, Q:E.114, H2O.80, H2O.80 FE.18: 3 residues within 4Å: Chain R: H.86, H.90, E.114 6 PLIP interactions: 4 interactions with chain R, 2 Ligand-Water interactions Metal complexes: R:H.86, R:H.90, R:E.114, R:E.114, H2O.85, H2O.85 FE.19: 3 residues within 4Å: Chain S: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain S, 2 Ligand-Water interactions Metal complexes: S:H.86, S:H.90, S:E.114, H2O.89, H2O.89 FE.20: 3 residues within 4Å: Chain T: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain T, 2 Ligand-Water interactions Metal complexes: T:H.86, T:H.90, T:E.114, H2O.94, H2O.94 FE.21: 3 residues within 4Å: Chain U: H.86, H.90, E.114 6 PLIP interactions: 4 interactions with chain U, 2 Ligand-Water interactions Metal complexes: U:H.86, U:H.90, U:E.114, U:E.114, H2O.99, H2O.99 FE.22: 3 residues within 4Å: Chain V: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain V, 2 Ligand-Water interactions Metal complexes: V:H.86, V:H.90, V:E.114, H2O.103, H2O.104 FE.23: 3 residues within 4Å: Chain W: H.86, H.90, E.114 5 PLIP interactions: 3 interactions with chain W, 2 Ligand-Water interactions Metal complexes: W:H.86, W:H.90, W:E.114, H2O.108, H2O.108 FE.24: 3 residues within 4Å: Chain X: H.86, H.90, E.114 6 PLIP interactions: 4 interactions with chain X, 2 Ligand-Water interactions Metal complexes: X:H.86, X:H.90, X:E.114, X:E.114, H2O.113, H2O.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frazao, C. et al., Multiple sulfane modifications in active-site cysteine thiols of two sulfur oxygenase reductases and analysis of substrate/product channels. To Be Published

Release Date

2020-03-04

Peptides

Sulfur oxygenase/reductase: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
A

E
C

F
D

G
A

H
C

I
D

J
A

K
C

L
D

M
B

N
E

O
F

P
B

Q
E

R
F

S
B

T
E

U
F

V
B

W
E

X
F

Sulfur oxygenase/reductase