SMTL ID : 6qp9.1

Drosophila Semaphorin 1a, extracellular domains 1-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: S.31, N.42, Q.51 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 6 residues within 4Å: Chain B: T.26, S.31, L.33, N.42, Q.51, G.89 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: N.236, P.240, P.244, Y.246, N.351 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.246, A:Y.246, A:N.351 NAG.4: 6 residues within 4Å: Chain B: R.234, N.236, P.240, Y.246, N.351, S.357 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.246 Hydrogen bonds: B:Y.246, B:N.351, B:S.357

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rozbesky, D. et al., Diversity of oligomerization in Drosophila semaphorins suggests a mechanism of functional fine-tuning. Nat Commun (2019)

Release Date

2019-08-21

Peptides

Semaphorin-1A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Semaphorin-1A