SMTL ID : 6qrz.1

Crystal structure of R2-like ligand-binding oxidase from Sulfolobus acidocaldarius solved by 3D micro-crystal electron diffraction

Coordinates

PDB Format

Method

ELECTRON CRYSTALLOGRAPHY 3.00 Å

Oligo State

homo-dimer

Ligands

2 x MN3: MANGANESE (III) ION(Non-covalent)

MN3.1: 5 residues within 4Å: Chain A: E.93, E.126, H.129, E.228 Ligands: FE.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.93, A:E.126, A:H.129, A:E.228 MN3.3: 5 residues within 4Å: Chain B: E.93, E.126, H.129, E.228 Ligands: FE.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.93, B:E.126, B:H.129, B:E.228

2 x FE: FE (III) ION(Non-covalent)

FE.2: 6 residues within 4Å: Chain A: F.122, E.126, E.193, E.228, H.231 Ligands: MN3.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.126, A:E.228, A:E.228, A:H.231 FE.4: 6 residues within 4Å: Chain B: F.122, E.126, E.193, E.228, H.231 Ligands: MN3.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.126, B:E.228, B:E.228, B:H.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, H. et al., Solving a new R2lox protein structure by microcrystal electron diffraction. Sci Adv (2019)

Release Date

2019-04-24

Peptides

Ribonucleoside-diphosphate reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Ribonucleoside-diphosphate reductase