SMTL ID : 6qu7.1

Crystal structure of human DHODH in complex with BAY 2402234

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

1 x ORO: OROTIC ACID(Non-covalent)

ORO.1: 13 residues within 4Å: Chain A: K.70, N.115, R.116, Y.117, G.118, F.119, N.182, S.185, P.186, N.187, N.254, T.255 Ligands: FMN.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.119 Hydrogen bonds: A:N.115, A:N.115, A:G.118, A:F.119, A:N.182, A:N.187, A:N.254, A:N.254, A:T.255 Salt bridges: A:K.70

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 25 residues within 4Å: Chain A: A.65, A.66, G.67, K.70, G.89, S.90, N.115, Y.117, N.151, N.182, K.225, T.253, N.254, T.255, S.275, G.276, L.279, V.303, G.304, G.305, L.325, Y.326, T.327 Ligands: ORO.1, JJE.3 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:N.115, A:Y.117, A:Y.326, A:Y.326 Hydrogen bonds: A:A.66, A:K.70, A:S.90, A:S.90, A:N.151, A:K.225, A:K.225, A:N.254, A:G.276, A:G.305, A:Y.326, A:T.327 Water bridges: A:A.66, A:G.304, A:V.306

1 x JJE: ~{N}-(2-chloranyl-6-fluoranyl-phenyl)-4-[4-ethyl-3-(hydroxymethyl)-5-oxidanylidene-1,2,4-triazol-1-yl]-5-fluoranyl-2-[(2~{S})-1,1,1-tris(fluoranyl)propan-2-yl]oxy-benzamide(Non-covalent)

JJE.3: 23 residues within 4Å: Chain A: Y.8, M.13, L.16, Q.17, L.20, P.22, A.25, H.26, L.28, A.29, F.32, T.33, L.37, L.38, F.68, V.104, R.106, V.113, Y.326, L.329, T.330, P.334 Ligands: FMN.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.8, A:L.16, A:A.25, A:A.29, A:F.32, A:L.38, A:V.104, A:L.329, A:T.330, A:P.334 Hydrogen bonds: A:Q.17, A:Y.326 Halogen bonds: A:A.29

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.215, V.217, H.218 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.215, A:H.218 SO4.5: 2 residues within 4Å: Chain A: R.216, R.219 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.216, A:R.216 Salt bridges: A:R.219

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 2 residues within 4Å: Chain A: K.277, P.278 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.277 ACT.7: 6 residues within 4Å: Chain A: Q.138, A.139, T.142, L.175, A.176, D.177 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.177 Water bridges: A:A.139, A:E.143 ACT.8: 2 residues within 4Å: Chain A: R.27, H.122 4 PLIP interactions: 4 interactions with chain A Water bridges: A:E.73, A:E.73 Salt bridges: A:R.27, A:H.122 ACT.9: 2 residues within 4Å: Chain A: K.197, R.201 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.197, A:R.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Christian, S. et al., The novel dihydroorotate dehydrogenase (DHODH) inhibitor BAY 2402234 triggers differentiation and is effective in the treatment of myeloid malignancies. Leukemia (2019)

Release Date

2019-06-05

Peptides

Dihydroorotate dehydrogenase (quinone), mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydroorotate dehydrogenase (quinone), mitochondrial

Related Entries With Identical Sequence