SMTL ID : 6qvo.1 (3 other biounits)

Crystal structure of human MTH1 in complex with N6-methyl-dAMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: A.104, H.106, T.129, D.130, S.131 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.104, A:D.130, A:S.131 Salt bridges: A:H.106 SO4.2: 4 residues within 4Å: Chain A: E.114, Y.177, K.179, D.188 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.177 Salt bridges: A:K.179 SO4.3: 3 residues within 4Å: Chain A: L.105, H.106, K.107 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.107 Salt bridges: A:K.107, A:K.173

1 x 6MA: N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE(Non-covalent)

6MA.4: 15 residues within 4Å: Chain A: Y.48, T.49, L.50, K.64, F.68, N.74, G.77, G.78, F.113, F.115, M.122, E.141, W.158, D.160, D.161 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.74, A:G.77, A:E.141, A:D.160 Water bridges: A:K.79 Salt bridges: A:K.64 pi-Stacking: A:W.158, A:W.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scaletti, E.R. et al., MutT homologue 1 (MTH1) removes N6-methyl-dATP from the dNTP pool. J.Biol.Chem. (2020)

Release Date

2020-03-18

Peptides

7,8-dihydro-8-oxoguanine triphosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

7,8-dihydro-8-oxoguanine triphosphatase

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